Browse Element(s) Details


Os.15696.1.S1_a_at

Description gb:AB081464.1
DB_XREF= gi:26006019
GEN=Rep2
TID=Os.15696.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15696 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for asparaginyl endopeptidase REP-2, complete cds.
PROD=asparaginyl endopeptidase REP-2
FL= gb:AB081464.1 gb:AK101360.1 gb:AY062178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4301011/11Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15696.1.S1_a_at--206--2151Chr02:25885189..25885213 (25 bp)
ACAGCAGTGTTGATCTTGTCGGAAA
LOC_Os02g43010
Os.15696.1.S1_a_at--1053--10591Chr02:25885113..25885137 (25 bp)
TTCTGGTCAGCCACTCGTTGATGAT
LOC_Os02g43010
Os.15696.1.S1_a_at--86--7851Chr02:25884923..25884947 (25 bp)
GGTACGGATCTTTGAGTCGCATTGC
LOC_Os02g43010
Os.15696.1.S1_a_at--966--8091Chr02:25884898..25884922 (25 bp)
GGACCGCTCACTCAGTACGGTATGA
LOC_Os02g43010
Os.15696.1.S1_a_at--172--2471Chr02:25884844..25884868 (25 bp)
AACAACGGTATCTCTGGCGCTTCAA
LOC_Os02g43010
Os.15696.1.S1_a_at--279--9891Chr02:25884800..25884824 (25 bp)
TACTTGCAGCAGTCACAACTCGGGT
LOC_Os02g43010
Os.15696.1.S1_a_at--844--7691Chr02:25884754..25884778 (25 bp)
GGGTACAGTGCTTGATCTGCCGCAA
LOC_Os02g43010
Os.15696.1.S1_a_at--1123--9471Chr02:25884739..25884763 (25 bp)
TCTGCCGCAACACGTGATATAGCCT
LOC_Os02g43010
Os.15696.1.S1_a_at--1071--2411Chr02:25884713..25884737 (25 bp)
AAAACTTATGCCTTGTACTCGTACT
LOC_Os02g43010
Os.15696.1.S1_a_at--635--6991Chr02:25884699..25884723 (25 bp)
GTACTCGTACTTCCTCAAAACAATA
LOC_Os02g43010
Os.15696.1.S1_a_at--1148--1771Chr02:25884656..25884680 (25 bp)
ACCGTCCAAGGATGTACCGCTGTAT
LOC_Os02g43010
Target Sequence 
ACAGCAGTGTTGATCTTGTCGGAAAACTTCTCNTTGGATTTGGAAATGGGCCTTCTGTGCTTCAAGCTGTTAGNCCTTCT
GGTCAGCCACTCGTTGATGATTGGGATTGTTTGAAGAGAATGGTACGGATCTTTGAGTCGCATTGCGGACCGCTCACTCA
GTACGGTATGAAGCACATGAGGGCGTTTGCTAATATTTGCAACAACGGTATCTCTGGCGCTTCAATGAAGGAAGCAAGCA
TCGCTACTTGCAGCAGTCACAACTCGGGTAGATGGAGCTCGCTGGTGCAGGGGTACAGTGCTTGATCTGCCGCAACACGT
GATATAGCCTCAAAACTTATGCCTTGTACTCGTACTTCCTCAAAACAATACCTTCAGGACTGCAAATAACCGTCCAAGGA
TGTACCGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15696.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis