Browse Element(s) Details


Os.5427.1.S1_at

Description gb:BX899103
DB_XREF= gi:40488765
DB_XREF=BX899103
CLONE=y863e06p3
TID=Os.5427.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46236 (A.thaliana) T46236 hypothetical protein T9C5.180 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4304011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43070OsAffx.30921.1.S1_s_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.1.S1_x_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.2.S1_at3/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.24253.1.S1_x_at1/112+25931303..25932544hypothetical protein
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5427.1.S1_at--458--6931Chr02:25907507..25907531 (25 bp)
GTAGGACATCTGATGCGCTCGAGGA
LOC_Os02g43040
Os.5427.1.S1_at--542--8571Chr02:25907414..25907438 (25 bp)
TGGATAAATCCTTGCGCCATTCTTA
LOC_Os02g43040
Os.5427.1.S1_at--8--4571Chr02:25907401..25907425 (25 bp)
GCGCCATTCTTAACATAGCTGGTGA
LOC_Os02g43040
Os.5427.1.S1_at--971--2771Chr02:25907344..25907368 (25 bp)
AAGAGATGTTCTTACCGCGGGCATC
LOC_Os02g43040
Os.5427.1.S1_at--565--4671Chr02:25907328..25907352 (25 bp)
GCGGGCATCTCCATGTGTATAACTG
LOC_Os02g43040
Os.5427.1.S1_at--886--8671Chr02:25907315..25907339 (25 bp)
TGTGTATAACTGTCAACCGGCGCTT
LOC_Os02g43040
Os.5427.1.S1_at--70--7091Chr02:25907304..25907328 (25 bp)
GTCAACCGGCGCTTGTTATGAAATG
LOC_Os02g43040
Os.5427.1.S1_at--936--7191Chr02:25907268..25907292 (25 bp)
GTCGTTCATTCTTAAACTCAAGCAG
LOC_Os02g43040
Os.5427.1.S1_at--1079--6351Chr02:25907237..25907261 (25 bp)
GATCCACCTTTGTTCATAGTGTTTT
LOC_Os02g43040
Os.5427.1.S1_at--108--8851Chr02:25907165..25907189 (25 bp)
TGATGATCACCGTGTGCGTACGTGT
LOC_Os02g43040
Os.5427.1.S1_at--732--1571Chr02:25907097..25907121 (25 bp)
AGCTCTTACCTTACTGCTCTTAATA
LOC_Os02g43040
Target Sequence 
GTAGGACATCTGATGCGCTCGAGGAGCTTGAATCTTTTAAAGAAATAAAGGAGAACCTGNCTNTGCNCCGTAGTAGATCA
AGGATGCAAGAGTCATTGGATAAATCCTTGCGCCATTCTTAACATAGCTGGTGAAGTATCCCANCCATTTAAGGAGGTTG
TGTGGTAAGAGATGTTCTTACCGCGGGCATCTCCATGTGTATAACTGTCAACCGGCGCTTGTTATGAAATGAGGATATAC
AAGTCGTTCATTCTTAAACTCAAGCAGGATCATGATCCACCTTTGTTCATAGTGTTTTGTATGCAAGCAAAACCAACCGG
ATACATGCATCCTNCTGGAAGTATATGATGATCACCGTGTGCGTACGTGTGGGATTATGTAATCATACTAAACCTGTTTA
TTTATTCTATTTTAGCTCTTACCTTACTGCTCTTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis