Browse Element(s) Details


Os.5182.1.S1_at

Description gb:AK111133.1
DB_XREF= gi:32996342
TID=Os.5182.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D05, full insert sequence.
FL= gb:AK111133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4303010/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5182.1.S1_at--864--1131Chr02:25904626..25904650 (25 bp)
AGTGCGACATCCAGGCGGCCCAGAT
LOC_Os02g43030
Os.5182.1.S1_at--1074--7531Chr02:25904331..25904355 (25 bp)
GTGGCTCGCCATGGCGGTCACGTAC
LOC_Os02g43030
Os.5182.1.S1_at--428--7771Chr02:25904304..25904328 (25 bp)
GGTGCTTAAGCTGTTCGGGATGCAT
LOC_Os02g43030
Os.5182.1.S1_at--486--1611Chr02:25904296..25904320 (25 bp)
AGCTGTTCGGGATGCATGGTGTTTA
LOC_Os02g43030
Os.5182.1.S1_at--1132--4991Chr02:25904283..25904307 (25 bp)
GCATGGTGTTTAACGGGCAAGTCTT
LOC_Os02g43030
Os.5182.1.S1_at--589--152Chr07:9961198..9961217 (20 bp)
ATTATTACCAAGATACTCCCTCTGT
NONE
Os.5182.1.S1_at--461--9911Chr02:25904210..25904234 (25 bp)
TACTCCCTCTGTATTCAATTACTTG
LOC_Os02g43030
Os.5182.1.S1_at--1046--7131Chr02:25904186..25904210 (25 bp)
GTCATTGGATAATACTCTCTCTGTT
LOC_Os02g43030
Os.5182.1.S1_at--84--5751Chr02:25904154..25904178 (25 bp)
GACGTCGGTTTAGTTCAATGTATTT
LOC_Os02g43030
Os.5182.1.S1_at--1160--10351Chr02:25904109..25904133 (25 bp)
TTTTCAAATTGACTCTTATTCGAAG
LOC_Os02g43030
Os.5182.1.S1_at--687--311Chr02:25904073..25904097 (25 bp)
ATACCTAAGAGTATCCTATATCGAT
NONE
Target Sequence 
AGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTG
CCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTT
CGTTCGGCCGTGGGCGGCCAGGGTCGNGGCCGTGTGCGCGGCGAGCAGNCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCG
CGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTAC
GGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAA
GGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGG
TTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTA
AGAGTATCCTATATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis