Browse Element(s) Details


OsAffx.12482.1.S1_at

Description tigr:9630.m04232
TID=OsAffx.12482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4388011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12482.1.S1_at--35--7131Chr02:26493334..26493358 (25 bp)
GTCATCGTTGTCATACTCCCAGTGC
LOC_Os02g43880
OsAffx.12482.1.S1_at--692--4291Chr02:26493151..26493175 (25 bp)
CCTCTTGTCGAGCTCATCACTGTAG
LOC_Os02g43880
OsAffx.12482.1.S1_at--267--391Chr02:26493136..26493160 (25 bp)
ATCACTGTAGCCGTATCTGTCGTCG
LOC_Os02g43880
OsAffx.12482.1.S1_at--257--6911Chr02:26493124..26493148 (25 bp)
GTATCTGTCGTCGTAGCCATAACTA
LOC_Os02g43880
OsAffx.12482.1.S1_at--522--4431Chr02:26493109..26493133 (25 bp)
GCCATAACTATTGCTATCCCTTATC
LOC_Os02g43880
OsAffx.12482.1.S1_at--290--10711Chr02:26493099..26493123 (25 bp)
TTGCTATCCCTTATCGTTGCACGGA
LOC_Os02g43880
OsAffx.12482.1.S1_at--921--10151Chr02:26493088..26493112 (25 bp)
TATCGTTGCACGGATCAGCCACTAT
LOC_Os02g43880
OsAffx.12482.1.S1_at--477--1931Chr02:26493079..26493103 (25 bp)
ACGGATCAGCCACTATCGTCTTCTC
LOC_Os02g43880
OsAffx.12482.1.S1_at--156--511Chr02:26493038..26493062 (25 bp)
ATCGTCGCCTCATGAGCGCATGGTT
LOC_Os02g43880
OsAffx.12482.1.S1_at--104--5891Chr02:26493025..26493049 (25 bp)
GAGCGCATGGTTCTGCCATCGCTGT
LOC_Os02g43880
OsAffx.12482.1.S1_at--860--531Chr02:26493008..26493032 (25 bp)
ATCGCTGTCGCCGAGGGAAGAGCTC
LOC_Os02g43880
Target Sequence 
GTCATCGTTGTCATACTCCCAGTGCCGCTCACCCAGCATCGCCGTCATCATCCTCTTAGGTCACCCGCCCAGCACACCGC
CTTCCCCGTCCTCCCCCCGCTCGAGTTACGGGTGAAGAAGGGACAAGCGGCTGCTCCGCTGAGCCCTCCTCGCACCTCCT
CCCCTCTCGTCGCCGGCTTCACCCCTCTTGTCGAGCTCATCACTGTAGCCGTATCTGTCGTCGTAGCCATAACTATTGCT
ATCCCTTATCGTTGCACGGATCAGCCACTATCGTCTTCTCCCCTCTCACCGCCGCCATCGTCGCCTCATGAGCGCATGGT
TCTGCCATCGCTGTCGCCGAGGGAAGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis