Browse Element(s) Details


Os.22624.2.S1_at

Description gb:AK070096.1
DB_XREF= gi:32980120
TID=Os.22624.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041N04, full insert sequence.
FL= gb:AK070096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4392011/11Anaphase promoting complex subunit 8/cdc23 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005680cellular_componentanaphase-promoting complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22624.2.S1_at--118--9151Chr02:26509051..26509075 (25 bp)
TGCGTATTCTTTTCTCCATTTTTGC
LOC_Os02g43920
Os.22624.2.S1_at--771--7651Chr02:26509147..26509171 (25 bp)
GGGATTGGTTATCACTCACACCGCA
LOC_Os02g43920
Os.22624.2.S1_at--203--5551Chr02:26509222..26509246 (25 bp)
GAAACTGGTACTTTGCGTATCTCCA
LOC_Os02g43920
Os.22624.2.S1_at--1089--4391Chr02:26509261..26509285 (25 bp)
GCCACTTCCGAGCTTCATAATGTAA
LOC_Os02g43920
Os.22624.2.S1_at--992--3031Chr02:26509284..26509308 (25 bp)
AATCCTTATTGTTTGTATCCTTGCC
LOC_Os02g43920
Os.22624.2.S1_at--601--711Chr02:26509348..26509372 (25 bp)
ATGATGATCTCTTCCAGTTGCTGAA
LOC_Os02g43920
Os.22624.2.S1_at--717--10371Chr02:26509382..26509406 (25 bp)
TTAGTAACACTAATCGCCGGCATGG
LOC_Os02g43920
Os.22624.2.S1_at--789--6371Chr02:26509437..26509461 (25 bp)
GATCGCTAGCTCAAGTATCGGCATT
LOC_Os02g43920
Os.22624.2.S1_at--684--3871Chr02:26509484..26509508 (25 bp)
CTGTTTCTATGGCTTTTCTTCACTA
LOC_Os02g43920
Os.22624.2.S1_at--314--10731Chr02:26509511..26509535 (25 bp)
TTGCTTTGGTCTGTGTTGCACTCAA
LOC_Os02g43920
Os.22624.2.S1_at--47--2771Chr02:26509573..26509597 (25 bp)
AAGACTTGCCTTGTCTGGATTCCAG
LOC_Os02g43920
Target Sequence 
TGCGTATTCTTTTCTCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACA
GTCATCATGAACAAAGGGGATTGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGCCACACACTG
ACCCACCTGATGAAACTGGTACTTTGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTT
ATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTG
AAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAA
GTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTATGGCTTTTCTTCACTAGATTGCTTTGGTCTGTGTTGCA
CTCAAAGTTCCATGGAGTTGCTTGCATATATAAGCTTCTTGGAAGACTTGCCTTGTCTGGATTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22624.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis