Browse Element(s) Details


OsAffx.2952.1.S1_at

Description tigr:9630.m04238
TID=OsAffx.2952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4391211/11ceramide kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2952.1.S1_at--757--10251Chr02:26502894..26502918 (25 bp)
TTTGTCATACACACGGTCACAAGAC
LOC_Os02g43912
OsAffx.2952.1.S1_at--886--5831Chr02:26502816..26502840 (25 bp)
GACCAGCAAACCTGCAAAACTTGGG
LOC_Os02g43912
OsAffx.2952.1.S1_at--444--8391Chr02:26502757..26502776 (20 bp)
GGCCCAAGAGCCTCATGGTATTTGT
LOC_Os02g43912
OsAffx.2952.1.S1_at--35--7871Chr02:26502628..26502652 (25 bp)
GGTATTTGTCCATCCATTGTGTGGA
LOC_Os02g43912
OsAffx.2952.1.S1_at--863--7611Chr02:26502581..26502605 (25 bp)
GGGAAACAGTAGCTCCATTATTTGA
LOC_Os02g43912
OsAffx.2952.1.S1_at--870--7391Chr02:26502365..26502389 (25 bp)
GTGATAGTCACACAGCGAGCAGGAC
LOC_Os02g43912
OsAffx.2952.1.S1_at--563--6111Chr02:26502094..26502118 (25 bp)
GAGTGCTAGGCCAGAGAACACGCTT
LOC_Os02g43912
OsAffx.2952.1.S1_at--101--5511Chr02:26502079..26502103 (25 bp)
GAACACGCTTAGTTATGATCCACAA
LOC_Os02g43912
OsAffx.2952.1.S1_at--988--3071Chr02:26502056..26502080 (25 bp)
AATCAGCTGCATCTGGCCACAAGAG
LOC_Os02g43912
OsAffx.2952.1.S1_at--500--3531Chr02:26502031..26502055 (25 bp)
CATGCTCATATTCTACTGCTTTATT
LOC_Os02g43912
OsAffx.2952.1.S1_at--666--4931Chr02:26501983..26502007 (25 bp)
GCTTGTCAAAATATACCTCTTGGTT
LOC_Os02g43912
Target Sequence 
TTTGTCATACACACGGTCACAAGACCAAGAAAAAGACCATCTCCATGGGTACCTTGTGAATATATTTTTGGTCATAAAGA
CCAGCAAACCTGCAAAACTTGGGTGGAGCATATAAAGACGTGCATAAATAAGGAACAGGATAGGCCCAAGAGCCTCATGG
TATTTGTCCATCCATTGTGTGGAAAAGGTAGAGGGTGTAAGAATTGGGAAACAGTAGCTCCATTATTTGAGCGGGCAAAA
GTAAAAACGAAGGTGATAGTCACACAGCGAGCAGGACATGCATATGATACTTTAGCATCTTTATCAGATAAAGATCTCAA
GAAATTTGATGGTGTTATTGCAGTGAACACAATAAATGCTTGTCTATCATTGTTTGATATTAAGCATCACAATTACAAGA
TGAGTGCTAGGCCAGAGAACACGCTTAGTTATGATCCACAATCAGCTGCATCTGGCCACAAGAGCATGCTCATATTCTAC
TGCTTTATTATGTATTTTGAAAAACACTTCAAGCTTGTCAAAATATACCTCTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis