Browse Element(s) Details


Os.50637.1.S1_at

Description gb:AY345232.1
DB_XREF= gi:33637695
TID=Os.50637.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50637 (NCBI UniGene Cluster)
DEF=Oryza sativa transcription factor Rap212 mRNA, complete cds.
PROD=transcription factor Rap212
FL= gb:AY345232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4394011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed
LOC_Os02g43950OsAffx.24713.1.S1_x_at3/112+26538183..26539090expressed protein
LOC_Os02g43960NANA2+26539842..26540902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50637.1.S1_at--419--3391Chr02:26519456..26519480 (25 bp)
CAGCGTCGAGGAGAACGCGCTGTTC
LOC_Os02g43940
Os.50637.1.S1_at--45--8912Chr05:25001912..25001931 (20 bp)
TGAGCGACGGGCTCTGGTGCTCACC
NONE
Os.50637.1.S1_at--605--7771Chr02:26519521..26519545 (25 bp)
GGTGCTCACCCGTCTGGACGACAGC
LOC_Os02g43940
Os.50637.1.S1_at--392--9271Chr02:26519599..26519623 (25 bp)
TCCTGTGGGCCGAGCAGTGCTGGAT
LOC_Os02g43940
Os.50637.1.S1_at--303--4531Chr02:26519639..26519663 (25 bp)
GCCCGTGCAGCCTGACTAATTAAGC
LOC_Os02g43940
Os.50637.1.S1_at--656--4451Chr02:26519648..26519672 (25 bp)
GCCTGACTAATTAAGCCAATCCACC
LOC_Os02g43940
Os.50637.1.S1_at--936--3131Chr02:26519656..26519680 (25 bp)
AATTAAGCCAATCCACCTGCTCCGA
LOC_Os02g43940
Os.50637.1.S1_at--909--3591Chr02:26519694..26519718 (25 bp)
CATTGCACCGGTTGGGTTGGTCGCA
LOC_Os02g43940
Os.50637.1.S1_at--466--10851Chr02:26519710..26519734 (25 bp)
TTGGTCGCAGCAGTCAACCTATCGA
LOC_Os02g43940
Os.50637.1.S1_at--703--5011Chr02:26519719..26519743 (25 bp)
GCAGTCAACCTATCGACACCATGGG
LOC_Os02g43940
Os.50637.1.S1_at--5--5651Chr02:26519733..26519757 (25 bp)
GACACCATGGGCGTCTTTTTCTTTT
LOC_Os02g43940
Target Sequence 
CAGCGTCGAGGAGAACGCGCTGTTCGACCTGCCCGACCTTCTCCTCGACCTGAGCGACGGGCTCTGGTGCTCACCCGTCT
GGACGACAGCGCCGGCCGATCAGTACGACGCCGGCGACGACGGCGACGACGCCGCGGCGCCGCTCCTGTGGGCCGAGCAG
TGCTGGATGGACGCCCCAGCGGCGCCCGTGCAGCCTGACTAATTAAGCCAATCCACCTGCTCCGACTCGCCGGCCGGCCA
TTGCACCGGTTGGGTTGGTCGCAGCAGTCAACCTATCGACACCATGGGCGTCTTTTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis