Browse Element(s) Details


OsAffx.12490.1.S1_at

Description tigr:9630.m04282
TID=OsAffx.12490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4426010/11zinc-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44200OsAffx.24719.1.S1_at11/112+26749058..26751276thioesterase family protein
LOC_Os02g44210OsAffx.2955.1.S1_at11/112+26754041..26754565hypothetical protein
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12490.1.S1_at--882--2211Chr02:26776637..26776661 (25 bp)
ACAAGAACCACTTCTGCGTCGACTG
LOC_Os02g44260
OsAffx.12490.1.S1_at--306--4371Chr02:26776422..26776594 (25 bp)
CCACGGCGTCCTACAGATTTGGAAG
LOC_Os02g44260
OsAffx.12490.1.S1_at--1053--6511Chr02:26776407..26776431 (25 bp)
GATTTGGAAGTATGCGTCCTGCTTC
LOC_Os02g44260
OsAffx.12490.1.S1_at--285--4151Chr02:26776376..26776400 (25 bp)
CGCGTCGACGACCTAAAGCTATTCG
LOC_Os02g44260
OsAffx.12490.1.S1_at--385--2571NONE
AACGGCATCCAGACGTACTGTACTG
NONE
OsAffx.12490.1.S1_at--786--6091Chr02:26776245..26776269 (25 bp)
GAGTCTTACTCCTACATGGTATCGG
LOC_Os02g44260
OsAffx.12490.1.S1_at--872--811Chr02:26776230..26776254 (25 bp)
ATGGTATCGGGCGTGCAGTCGCACA
LOC_Os02g44260
OsAffx.12490.1.S1_at--1113--1131Chr02:26776214..26776238 (25 bp)
AGTCGCACACGTTGAGTGACCACGA
LOC_Os02g44260
OsAffx.12490.1.S1_at--872--1691Chr02:26776196..26776220 (25 bp)
ACCACGAGGTGGTGTTCCTGAACGA
LOC_Os02g44260
OsAffx.12490.1.S1_at--127--8811Chr02:26776184..26776208 (25 bp)
TGTTCCTGAACGAGCGCACGGCGAG
LOC_Os02g44260
OsAffx.12490.1.S1_at--269--1991Chr02:26776094..26776115 (22 bp)
ACTGCTCCCTCTTCTGCAAGGTGAA
LOC_Os02g44260
Target Sequence 
ACAAGAACCACTTCTGCGTCGACTGCGCCGCCGCGCTCTGCCGCCACTGCCTCCCCCACGACGCCTCCCACGGCGTCCTA
CAGATTTGGAAGTATGCGTCCTGCTTCGTCGTCCGCGTCGACGACCTAAAGCTATTCGATTGCAACGGCATCCAGACGTA
CTGTACTGATCATGAGTCTTACTCCTACATGGTATCGGGCGTGCAGTCGCACACGTTGAGTGACCACGAGGTGGTGTTCC
TGAACGAGCGCACGGCGAGGAAGCGGTCGGCGAGCGTGGAGAACCCCTGCGCCGCGTGCGCGCGGCCGCTGCCGTCCGGG
CACGACTACTGCTCCCTCTTCTGCAAGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis