Browse Element(s) Details


OsAffx.12491.1.S1_at

Description tigr:9630.m04284
TID=OsAffx.12491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=proline-rich protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4430010/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12491.1.S1_at--897--3651Chr02:26795203..26795227 (25 bp)
CTTCACATGACGAGGTTATTATCTT
LOC_Os02g44300
OsAffx.12491.1.S1_at--173--8931Chr02:26795210..26795234 (25 bp)
TGACGAGGTTATTATCTTTAAGCAT
LOC_Os02g44300
OsAffx.12491.1.S1_at--1082--431Chr02:26795223..26795247 (25 bp)
ATCTTTAAGCATTGCTCGTTGGCAG
LOC_Os02g44300
OsAffx.12491.1.S1_at--711--9791Chr02:26795228..26795252 (25 bp)
TAAGCATTGCTCGTTGGCAGAATAT
LOC_Os02g44300
OsAffx.12491.1.S1_at--389--9071Chr02:26795235..26795259 (25 bp)
TGCTCGTTGGCAGAATATTCCTTAG
LOC_Os02g44300
OsAffx.12491.1.S1_at--456--8231Chr02:26795243..26795267 (25 bp)
GGCAGAATATTCCTTAGAGCTTACT
LOC_Os02g44300
OsAffx.12491.1.S1_at--188--5231Chr02:26795247..26795271 (25 bp)
GAATATTCCTTAGAGCTTACTATTG
LOC_Os02g44300
OsAffx.12491.1.S1_at--351--9251Chr02:26795253..26795277 (25 bp)
TCCTTAGAGCTTACTATTGAACTAG
LOC_Os02g44300
OsAffx.12491.1.S1_at--298--5911Chr02:26795259..26795283 (25 bp)
GAGCTTACTATTGAACTAGACATTA
LOC_Os02g44300
OsAffx.12491.1.S1_at--1017--2791Chr02:26795284..26795308 (25 bp)
AAGATCATAAACACGTACTCCCTCC
LOC_Os02g44300
OsAffx.12491.1.S1_at--32--4231NONE
CCGTTTCACAATGGCGTCTCTTTGA
NONE
Target Sequence 
CTTCACATGACGAGGTTATTATCTTTAAGCATTGCTCGTTGGCAGAATATTCCTTAGAGCTTACTATTGAACTAGACATT
AAAGATCATAAACACGTACTCCCTCCGTTTCACAATGGCGTCTCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis