Browse Element(s) Details


OsAffx.12589.1.S1_at

Description tigr:9630.m05047
TID=OsAffx.12589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5138011/11hypothetical protein
LOC_Os04g345003/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein
LOC_Os02g51370OsAffx.24824.1.S1_s_at11/112+31455355..31456975Glutaredoxin family protein, expressed
LOC_Os02g51380OsAffx.12589.1.S1_at11/112+31459335..31459986hypothetical protein
LOC_Os02g51390Os.24562.1.S1_at11/112+31461533..31465667expressed protein
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12589.1.S1_at--209--5151Chr02:31459899..31459923 (25 bp)
GCAACACGCTGCTTCGTCGTTTTTC
LOC_Os02g51380
OsAffx.12589.1.S1_at--735--9051Chr02:31459890..31459914 (25 bp)
TGCTTCGTCGTTTTTCCAATTTCAC
LOC_Os02g51380
OsAffx.12589.1.S1_at--1038--7831Chr02:31459620..31459888 (25 bp)
GGTTAAGCCCGGACGACGGCATCCG
LOC_Os02g51380
OsAffx.12589.1.S1_at--330--5751Chr02:31459606..31459630 (25 bp)
GACGGCATCCGGAGACTGTCCTCGG
LOC_Os02g51380
OsAffx.12589.1.S1_at--975--551Chr02:31459600..31459624 (25 bp)
ATCCGGAGACTGTCCTCGGCGTCAG
LOC_Os02g51380
OsAffx.12589.1.S1_at--301--874Chr03:32061238..32061262 (25 bp)
ATGGCGATGCCGACGAGATCGATCT
NONE
OsAffx.12589.1.S1_at--818--1873Chr06:16101211..16101233 (23 bp)
ACGAGATCGATCTAGGGCGCCACAA
NONE
OsAffx.12589.1.S1_at--358--7571Chr02:31459439..31459463 (25 bp)
GGGCGCCACAATGAGCAAGAGCTGA
LOC_Os02g51380
OsAffx.12589.1.S1_at--1104--5931Chr02:31459427..31459451 (25 bp)
GAGCAAGAGCTGACGCATCTCGATC
LOC_Os02g51380
OsAffx.12589.1.S1_at--1011--3011Chr02:31459385..31459409 (25 bp)
AATCCCCTTTGTCTCACTGACCTAA
LOC_Os02g51380
OsAffx.12589.1.S1_at--796--7153Chr03:32061308..32061330 (23 bp)
GTCTCACTGACCTAAAGAATGACCA
NONE
Target Sequence 
GCAACACGCTGCTTCGTCGTTTTTCCAATTTCACCGGTTAAGCCCGGACGACGGCATCCGGAGACTGTCCTCGGCGTCAG
CGAGAGGGGGGACTGCGGCAAAGGCGGCGGCGATGGGTGGAATGGCGATGGCAGCGCCGCCGTGAGCTACAGCTGGGTGA
GGGCGAGAGGTGATTGCGGCGGCGGGTGGAATGGCGATGCCGACGAGATCGATCTAGGGCGCCACAATGAGCAAGAGCTG
ACGCATCTCGATCCCCTTTCTCTCACTCTCAATCCCCTTTGTCTCACTGACCTAAAGAATGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis