Browse Element(s) Details


OsAffx.12588.1.S1_at

Description tigr:9630.m05045
TID=OsAffx.12588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5136011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein
LOC_Os02g51370OsAffx.24824.1.S1_s_at11/112+31455355..31456975Glutaredoxin family protein, expressed
LOC_Os02g51380OsAffx.12589.1.S1_at11/112+31459335..31459986hypothetical protein
LOC_Os02g51390Os.24562.1.S1_at11/112+31461533..31465667expressed protein
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12588.1.S1_at--347--7991Chr02:31444616..31444640 (25 bp)
GGATGCAGCCTGTGGGTTGTCTCTA
LOC_Os02g51360
OsAffx.12588.1.S1_at--604--6331Chr02:31444617..31444641 (25 bp)
GATGCAGCCTGTGGGTTGTCTCTAG
LOC_Os02g51360
OsAffx.12588.1.S1_at--1114--3371Chr02:31444621..31444645 (25 bp)
CAGCCTGTGGGTTGTCTCTAGGGTT
LOC_Os02g51360
OsAffx.12588.1.S1_at--504--11Chr02:31444625..31444649 (25 bp)
CTGTGGGTTGTCTCTAGGGTTTAGT
LOC_Os02g51360
OsAffx.12588.1.S1_at--897--10776Chr07:21756994..21757013 (20 bp)
TTGTCTCTAGGGTTTAGTGGTGTAC
NONE
OsAffx.12588.1.S1_at--857--6952Chr02:31444634..31444658 (25 bp)
GTCTCTAGGGTTTAGTGGTGTACTG
LOC_Os02g51360
OsAffx.12588.1.S1_at--857--7871Chr02:31444642..31444666 (25 bp)
GGTTTAGTGGTGTACTGGGCCTCCT
LOC_Os02g51360
OsAffx.12588.1.S1_at--482--10411Chr02:31444645..31444669 (25 bp)
TTAGTGGTGTACTGGGCCTCCTGGA
LOC_Os02g51360
OsAffx.12588.1.S1_at--656--10071Chr02:31444646..31444670 (25 bp)
TAGTGGTGTACTGGGCCTCCTGGAC
LOC_Os02g51360
OsAffx.12588.1.S1_at--886--7731Chr02:31444650..31444674 (25 bp)
GGTGTACTGGGCCTCCTGGACCTAT
LOC_Os02g51360
OsAffx.12588.1.S1_at--622--6974Chr05:18451676..18451696 (21 bp)
GTACTGGGCCTCCTGGACCTATTGG
NONE
Target Sequence 
GGATGCAGCCTGTGGGTTGTCTCTAGGGTTTAGTGGTGTACTGGGCCTCCTGGACCTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis