Browse Element(s) Details


Os.11474.1.S1_at

Description gb:AK066613.1
DB_XREF= gi:32976631
TID=Os.11474.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073O20, full insert sequence.
FL= gb:AK066613.1 gb:AK100919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g513507/11kelch repeat-containing F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein
LOC_Os02g51370OsAffx.24824.1.S1_s_at11/112+31455355..31456975Glutaredoxin family protein, expressed
LOC_Os02g51380OsAffx.12589.1.S1_at11/112+31459335..31459986hypothetical protein
LOC_Os02g51390Os.24562.1.S1_at11/112+31461533..31465667expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11474.1.S1_at--110--2351Chr02:31439102..31439126 (25 bp)
AAAGCACCGATTCGCCTGATGGGTA
LOC_Os02g51350
Os.11474.1.S1_at--515--3051Chr02:31439078..31439102 (25 bp)
AATCTCTGCCTTTCTTTTTGACATT
LOC_Os02g51350
Os.11474.1.S1_at--591--1191Chr02:31439028..31439052 (25 bp)
AGTAGTTGTTTCAGTGCATGCGTCA
LOC_Os02g51350
Os.11474.1.S1_at--1076--4631Chr02:31439009..31439033 (25 bp)
GCGTCACTGGTCACCCTTAGGTAAA
LOC_Os02g51350
Os.11474.1.S1_at--549--171Chr02:31438985..31439009 (25 bp)
ATTTTCCACATTCGATTTGCAGCTG
LOC_Os02g51350
Os.11474.1.S1_at--503--5211Chr02:31438959..31438983 (25 bp)
GAATTTGTACCTTGTTCTACCCTCT
LOC_Os02g51350
Os.11474.1.S1_at--1159--4011Chr02:31438836..31438860 (25 bp)
CGATCCCATTACTCTTTTGTGCAAA
LOC_Os02g51350
Os.11474.1.S1_at--970--6751Chr02:31438771..31438795 (25 bp)
GTTCACTTTAGATGCGTCCTTTTTG
NONE
Os.11474.1.S1_at--97--10731Chr02:31438749..31438773 (25 bp)
TTGCTCCCTTTGTTGAGTCATCTGA
NONE
Os.11474.1.S1_at--1009--1151Chr02:31438734..31438758 (25 bp)
AGTCATCTGACTGTTGCACCTTTCT
NONE
Os.11474.1.S1_at--307--6591NONE
GATTGCCTGGATGCGCCAAATTCAT
NONE
Target Sequence 
AAAGCACCGATTCGCCTGATGGGTAATCTCTGCCTTTCTTTTTGACATTTCAGATTTTACACGTGGTTCAATAGAGTAGT
TGTTTCAGTGCATGCGTCACTGGTCACCCTTAGGTAAATTTTCCACATTCGATTTGCAGCTGGGAATTTGTACCTTGTTC
TACCCTCTATCGGAACAAGTTCCCGATGGATGCATTTAGTCGACAAACTGTAATTGAGGCANCATTGCATCTGTACAATT
GTATGAGGTTCTGATTTGGTGCCTGTCGATCCCATTACTCTTTTGTGCAAATGTTTCTNTGNANCAGNNNGANAGAACAT
GAATTATAATGTTCCTCTGTTCACTTTAGATGCGTCCTTTTTGCTCCCTTTGTTGAGTCATCTGACTGTTGCACCTTTCT
CGTGATTGCCTGGATGCGCCAAATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis