Browse Element(s) Details


Os.8525.2.S1_x_at

Description gb:AK111248.1
DB_XREF= gi:32996457
TID=Os.8525.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D09, full insert sequence.
FL= gb:AK111248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5133011/11RINT-1/TIP-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein
LOC_Os02g51370OsAffx.24824.1.S1_s_at11/112+31455355..31456975Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8525.2.S1_x_at--275--471Chr02:31432056..31432080 (25 bp)
ATCTCGAGATTCTCCGCTGCTATTA
LOC_Os02g51330
Os.8525.2.S1_x_at--1145--10171Chr02:31432036..31432060 (25 bp)
TATTATCCCCGATCCAAACCCTAAT
LOC_Os02g51330
Os.8525.2.S1_x_at--932--2371Chr02:31432021..31432045 (25 bp)
AAACCCTAATCGATCCCGCCATGGA
LOC_Os02g51330
Os.8525.2.S1_x_at--1006--1571Chr02:31431865..31431889 (25 bp)
AGCTCGAGGCCTCGGTATCCGACCT
LOC_Os02g51330
Os.8525.2.S1_x_at--188--7931Chr02:31431536..31431560 (25 bp)
GGATTACGCCGGTGAGTGTGAAATT
LOC_Os02g51330
Os.8525.2.S1_x_at--1038--10431Chr02:31431513..31431537 (25 bp)
TTAGTTTCCTCGGACCTTGTATCCG
LOC_Os02g51330
Os.8525.2.S1_x_at--250--1691Chr02:31431500..31431524 (25 bp)
ACCTTGTATCCGTGCTTTGTTTGAT
LOC_Os02g51330
Os.8525.2.S1_x_at--1064--151Chr02:31431470..31431494 (25 bp)
ATATTTCGGATGATTAAAAGCTGAC
LOC_Os02g51330
Os.8525.2.S1_x_at--686--2431Chr02:31431455..31431479 (25 bp)
AAAAGCTGACAATGAGATCACTCCT
LOC_Os02g51330
Os.8525.2.S1_x_at--899--6031Chr02:31431442..31431466 (25 bp)
GAGATCACTCCTATGACAACTCTTA
LOC_Os02g51330
Os.8525.2.S1_x_at--337--3311Chr02:31431437..31431461 (25 bp)
CACTCCTATGACAACTCTTAACGCT
LOC_Os02g51330
Target Sequence 
ATCTCGAGATTCTCCGCTGCTATTATCCCCGATCCAAACCCTAATCGATCCCGCCATGGAAGCGGCGGTGCTCCCGCGAC
CCGCGGACATCACCCCGGAGCTCCGCCGTTTCCTCGACTCCCGCTTCCGCTCGCAAGCAGACCTCGCCGCGGCCGCCGAC
GTCGAGGCCGAGATCCGCGGGCGCTACGCGGAGCTCGAGGCCTCGGTATCCGACCTCTCCGTCCGCCTAGCGGCCGCCGC
CGCAGCTTACTCCTCCAGCTGCAGCGCCGCCGGCACCGCTCTGAGTAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCT
CCACCTCTGAACCAGGGGTCACAGAAGCGGTGGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACTTTCTTCTCTGGCC
AAAGAGGTGGCGAGAGTGGAGTTGGTCAGGGATTACGCCGGTGAGTGTGAAATTAGTTTCCTCGGACCTTGTATCCGTGC
TTTGTTTGATATTTGATATTTCGGATGATTAAAAGCTGACAATGAGATCACTCCTATGACAACTCTTAACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8525.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis