Browse Element(s) Details


Os.10683.1.A1_s_at

Description gb:CF303426
DB_XREF= gi:33675187
DB_XREF=ABF1--02-D16.g1
CLONE=ABF1--02-D16
TID=Os.10683.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10683 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195489.1 (A.thaliana) ovule development protein aintegumenta
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g513005/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51260OsAffx.22461.4.S1_at11/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.3.S1_x_at8/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.2.S1_x_at6/112+31379642..31382690hypothetical protein
LOC_Os02g51270OsAffx.3035.1.S1_at11/112+31384253..31384768hypothetical protein
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10683.1.A1_s_at--880--5571Chr02:31404717..31404740 (24 bp)
GAGACATTTACCTGGGAACTTTCAA
LOC_Os02g51300
Os.10683.1.A1_s_at--165--3971Chr02:31404587..31404611 (25 bp)
CGGAGGCTTACGACATTGCTGCTAT
LOC_Os02g51300
Os.10683.1.A1_s_at--621--9111Chr02:31404571..31404595 (25 bp)
TGCTGCTATTGAGATCCGTGGCAAA
LOC_Os02g51300
Os.10683.1.A1_s_at--904--3971Chr02:31404542..31404566 (25 bp)
CGGTGACCAACTTTGATCGAAGCAA
LOC_Os02g51300
Os.10683.1.A1_s_at--206--5411Chr02:31404475..31404499 (25 bp)
GAAGCTGCTTGCGTCTAAGCCAGAA
LOC_Os02g51300
Os.10683.1.A1_s_at--1025--2391Chr02:31404447..31404471 (25 bp)
AAACTTGACTTGGTGGAGCCGCATC
NONE
Os.10683.1.A1_s_at--1147--5851Chr02:31404432..31404456 (25 bp)
GAGCCGCATCGCATATTAGGGTTGT
NONE
Os.10683.1.A1_s_at--146--7671Chr02:31404414..31404438 (25 bp)
GGGTTGTTTCAGTCATATTTGGAGC
NONE
Os.10683.1.A1_s_at--628--1551Chr02:31404359..31404383 (25 bp)
AGCTTGTTAATATCTCTGCGTTATA
NONE
Os.10683.1.A1_s_at--199--491Chr02:31404243..31404267 (25 bp)
ATCTGTACAACACCTGAGCAACTCA
NONE
Os.10683.1.A1_s_at--761--9471Chr02:31404129..31404153 (25 bp)
TCTGTTCAGAGTTCACATTCTCGAT
NONE
Target Sequence 
GAGACATTTACCTGGGAACTTTCAAAACTGAGGAAGAAGCAGCGGAGGCTTACGACATTGCTGCTATTGAGATCCGTGGC
AAAAATNCGGTGACCAACTTTGATCGAAGCAACTACATGGAGAAGGGTATGCACTGTATAGAAGGGGCAGGCTTGAAGCT
GCTTGCGTCTAAGCCAGAATGAAAACTTGACTTGGTGGAGCCGCATCGCATATTAGGGTTGTTTCAGTCATATTTGGAGC
TTAGTGGTACATACAGATACAACTGGTTGCAGCTTGTTAATATCTCTGCGTTATAATCTACAAATTACAGCTCAATTTTC
GATTGACTAGCAAATTCGTCTCAGCAAGAAAGATTTTGAGCATGTATTATAGGTTGAGTAGGGTAGATCTGTACAACACC
TGAGCAACTCAATATTTATGTTCTGCTCAATATAACCTATCATTCCAGATTGTATGTTCCCCGTTGTCATTGAAAATGAC
TGCACGTTTGTGGGGATTCTTCTGTTCAGAGTTCACATTCTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10683.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis