Browse Element(s) Details


Os.47948.1.S1_at

Description gb:AK068818.1
DB_XREF= gi:32978843
TID=Os.47948.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163F23, full insert sequence.
FL= gb:AK068818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5128010/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51240NANA2+31372122..31376793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g51250NANA2+31377010..31378357retrotransposon protein, putative, unclassified
LOC_Os02g51260OsAffx.22461.4.S1_at11/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.3.S1_x_at8/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.2.S1_x_at6/112+31379642..31382690hypothetical protein
LOC_Os02g51270OsAffx.3035.1.S1_at11/112+31384253..31384768hypothetical protein
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47948.1.S1_at--542--5891Chr02:31392691..31392715 (25 bp)
GAGCGGCATCAGAGCATAAGCACCA
LOC_Os02g51280
Os.47948.1.S1_at--577--9431Chr02:31392766..31392790 (25 bp)
TCGGTGTGACTTTGATCTGTTCTTT
LOC_Os02g51280
Os.47948.1.S1_at--822--3871Chr02:31392782..31392806 (25 bp)
CTGTTCTTTGTCTTGGTTTCATTCT
LOC_Os02g51280
Os.47948.1.S1_at--1019--9511Chr02:31392833..31392857 (25 bp)
TCTCTCCCTAGGCAAGAGCTTGCAA
LOC_Os02g51280
Os.47948.1.S1_at--399--2931Chr02:31392856..31392880 (25 bp)
AAGGACTCACACACTTAGCTGCATT
LOC_Os02g51280
Os.47948.1.S1_at--844--71Chr02:31392878..31392902 (25 bp)
ATTCCATGGCATTCTTACGTACGTA
LOC_Os02g51280
Os.47948.1.S1_at--1158--3631Chr02:31392891..31392915 (25 bp)
CTTACGTACGTATGCTAGGCTAGCT
LOC_Os02g51280
Os.47948.1.S1_at--584--1571Chr02:31392912..31392936 (25 bp)
AGCTAGCTACCTGAACTTGTGCTTA
LOC_Os02g51280
Os.47948.1.S1_at--594--3391Chr02:31392991..31393015 (25 bp)
CAGCTGCATGCGGAGAGATTGTTCT
LOC_Os02g51280
Os.47948.1.S1_at--632--5191Chr02:31393084..31393108 (25 bp)
GCAATCCATTATCTGCATGCCATGA
LOC_Os02g51280
Os.47948.1.S1_at--1016--1211NONE
AGTTCAGTAGTAACGCTGGCCTCTC
NONE
Target Sequence 
GAGCGGCATCAGAGCATAAGCACCAGCGACTCGTAGGGNTCTGAAGATCGCGTCGCGTCGCATGCATTGGCCCGGTCGGT
GTGACTTTGATCTGTTCTTTGTCTTGGTTTCATTCTTTCTTCTTTTGTTGGTTTCCTTCCACTCTCTCCCTAGGCAAGAG
CTTGCAAGGACTCACACACTTAGCTGCATTCCATGGCATTCTTACGTACGTATGCTAGGCTAGCTAGCTACCTGAACTTG
TGCTTATGGGTGAGAGCGAGGTGATGATGCCTGGGAGGATCAAGAGGAGGGAAACGCACGCAGCTGCATGCGGAGAGATT
GTTCTTTTTGTTCATTTAGCTCTAGAGTTTGATCGAGTGCGAGCAGAAGAGAAATTTTTTTTTNATCAAGCATGGCAATC
CATTATCTGCATGCCATGACGATGGNTCATTTTTTTTTNNCNNNATTGCTAGTTCAGTAGTAACGCTGGCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis