Browse Element(s) Details


OsAffx.12587.1.S1_s_at

Description tigr:9630.m05041
TID=OsAffx.12587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5132011/11bHLH protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12587.1.S1_s_at--425--3911Chr02:31418463..31418487 (25 bp)
CGGCCACCAGAGAGCATTTAGCTAG
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--883--3111Chr02:31418415..31418439 (25 bp)
AATATTTATGTCGTATGTCCCTCCC
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--1137--2271Chr02:31418389..31418413 (25 bp)
AAATGTACGAGCCACGCTTACACGC
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--724--2171Chr02:31418370..31418394 (25 bp)
ACACGCGCGTGTATCGATCTCTCGA
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--1007--9791Chr02:31418335..31418359 (25 bp)
TAAGCTCCACTCGAAGTAGGGCATT
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--1135--2711Chr02:31418296..31418320 (25 bp)
AAGCAGAGGCTTATCCTCGCTTTAG
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--188--10351Chr02:31418276..31418300 (25 bp)
TTTAGCTCATATTTTCATCGCTTGA
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--1032--3531Chr02:31418261..31418285 (25 bp)
CATCGCTTGATGTGTCCTCTCTGAA
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--807--3311Chr02:31418232..31418256 (25 bp)
CACATCTTGTCTTGTTTGGTTTTTC
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--1005--171Chr02:31418184..31418208 (25 bp)
ATTTAGCTGGTGTGGTTTGGATCGA
LOC_Os02g51320
OsAffx.12587.1.S1_s_at--495--7971Chr02:31418166..31418190 (25 bp)
GGATCGAGTTGTGTCCTCTACAGAC
LOC_Os02g51320
Target Sequence 
CGGCCACCAGAGAGCATTTAGCTAGGGTATATATATCTACATATATAAAATATTTATGTCGTATGTCCCTCCCCAAATGT
ACGAGCCACGCTTACACGCGCGTGTATCGATCTCTCGATCTCTCTCTCTAAGCTCCACTCGAAGTAGGGCATTAGCACTA
GGGGCCTAAGCAGAGGCTTATCCTCGCTTTAGCTCATATTTTCATCGCTTGATGTGTCCTCTCTGAACCCCCACATCTTG
TCTTGTTTGGTTTTTCCCTCTCCCTTCCAATCTATGTAAATTTAGCTGGTGTGGTTTGGATCGAGTTGTGTCCTCTACAG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12587.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis