Browse Element(s) Details


OsAffx.12731.1.S1_at

Description tigr:9631.m00355
TID=OsAffx.12731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0442011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12731.1.S1_at--1105--8511Chr03:2020479..2020503 (25 bp)
TGGACATTGCGTACTCTCCTCCGAT
LOC_Os03g04420
OsAffx.12731.1.S1_at--101--10091Chr03:2020451..2020475 (25 bp)
TATGGACGCTAGAAAGGCCCTTGAA
LOC_Os03g04420
OsAffx.12731.1.S1_at--268--1671Chr03:2020413..2020437 (25 bp)
ACCATATTTGGCGTGTTTGGTGGGC
LOC_Os03g04420
OsAffx.12731.1.S1_at--7--2931Chr03:2020330..2020354 (25 bp)
AAGGAGATCGCCACCTTTACACAGA
LOC_Os03g04420
OsAffx.12731.1.S1_at--831--531Chr03:2020324..2020348 (25 bp)
ATCGCCACCTTTACACAGACAATTG
LOC_Os03g04420
OsAffx.12731.1.S1_at--1029--8611Chr03:2020301..2020325 (25 bp)
TGGTGTAGTTGGCACACCCACCACT
LOC_Os03g04420
OsAffx.12731.1.S1_at--344--3351Chr03:2020261..2020285 (25 bp)
CACCTCGACCGTGACGGAGCAAAGA
LOC_Os03g04420
OsAffx.12731.1.S1_at--973--2311Chr03:2020241..2020265 (25 bp)
AAAGAGTGACCATGCCTACGAAGGC
LOC_Os03g04420
OsAffx.12731.1.S1_at--678--5291Chr03:2020222..2020246 (25 bp)
GAAGGCATCACCAACCATTTCCCAT
LOC_Os03g04420
OsAffx.12731.1.S1_at--1141--4371Chr03:2020212..2020236 (25 bp)
CCAACCATTTCCCATGTAGCGAAGA
LOC_Os03g04420
OsAffx.12731.1.S1_at--652--6951Chr03:2020197..2020221 (25 bp)
GTAGCGAAGACGATGGGTTCCCTAG
LOC_Os03g04420
Target Sequence 
TGGACATTGCGTACTCTCCTCCGATGGATATGGACGCTAGAAAGGCCCTTGAAGAAATCATCAGAAACCATATTTGGCGT
GTTTGGTGGGCGAACTCGATGGAGGGAGTGATGGGAAAGAGAGGAACGAGGGGGAGATACCAAGAGAAAAAGGAGATCGC
CACCTTTACACAGACAATTGGTGTAGTTGGCACACCCACCACTTTTCACTCCAGCTTCCACCTCGACCGTGACGGAGCAA
AGAGTGACCATGCCTACGAAGGCATCACCAACCATTTCCCATGTAGCGAAGACGATGGGTTCCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis