Browse Element(s) Details


Os.49142.1.S1_at

Description gb:AK059547.1
DB_XREF= gi:32969565
TID=Os.49142.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F06, full insert sequence.
FL= gb:AK059547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0439011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49142.1.S1_at--519--10131Chr03:1995319..1995343 (25 bp)
TATCCCGTCCCTGTTGCAACAAGGA
LOC_Os03g04390
Os.49142.1.S1_at--117--291Chr03:1995273..1995297 (25 bp)
ATAGTGTTAGGCTGGCTGTTGTCTT
LOC_Os03g04390
Os.49142.1.S1_at--977--8811Chr03:1995257..1995281 (25 bp)
TGTTGTCTTCGGTCTGATATCATCT
LOC_Os03g04390
Os.49142.1.S1_at--1158--10851Chr03:1995228..1995252 (25 bp)
TTGGATCCCCTATTCTTGTCAAGAA
LOC_Os03g04390
Os.49142.1.S1_at--1158--4631Chr03:1995197..1995221 (25 bp)
GCGTATATGCAACCACTGTCATCAT
LOC_Os03g04390
Os.49142.1.S1_at--883--8311Chr03:1995094..1995118 (25 bp)
GGCTCTTGTTGCTGTGGTGACTACT
LOC_Os03g04390
Os.49142.1.S1_at--90--2991Chr03:1995037..1995061 (25 bp)
AATGTTCTTCACACCTTCGGCAACA
LOC_Os03g04390
Os.49142.1.S1_at--844--6911Chr03:1994938..1994962 (25 bp)
GTATGAGTCCAAATGCTACAGCTGT
LOC_Os03g04390
Os.49142.1.S1_at--691--5971Chr03:1994888..1994912 (25 bp)
GAGAAATCAATTCCCAGGTACTGGT
LOC_Os03g04390
Os.49142.1.S1_at--543--5431Chr03:1994804..1994828 (25 bp)
GAACCTCCTCTTAATACTGTAACAC
LOC_Os03g04390
Os.49142.1.S1_at--642--7031Chr03:1994768..1994792 (25 bp)
GTACAAAGTCCATTCTTTTCGAGTG
LOC_Os03g04390
Target Sequence 
TATCCCGTCCCTGTTGCAACAAGGACAACCACAATGCCTAATAAGCATAGTGTTAGGCTGGCTGTTGTCTTCGGTCTGAT
ATCATCTGAGATTGGATCCCCTATTCTTGTCAAGAAGAATGTGCGTATATGCAACCACTGTCATCATGCATTGAAGTTGA
TATCAAGATATTCAGGACGGAGGATTGTTGTCGGTGACTCAAAGATCTATCATGAATTCTCTGATGGCTCTTGTTGCTGT
GGTGACTACTGGTGAATGGATATCACTGTTTCAGTATTTGACAATGTTCTTCACACCTTCGGCAACACCAATGGNAACGC
CTGAATGAATAGGTGTTGTGGCAAAATATCATCATAAAGTCACAGCTTAGATGAACCATCGAGTATGAGTCCAAATGCTA
CAGCTGTATCAATTTTCGGGGGGCACATAGACGAGAAATCAATTCCCAGGTACTGGTACAGTGTTACTCCGGTAGCAGCG
GCTCAAAGTGAAAGGGTGAATATGCACACTGGACAGGAACCTCCTCTTAATACTGTAACACATTGATATGATGTACAAAG
TCCATTCTTTTCGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis