Browse Element(s) Details


Os.55093.1.S1_at

Description gb:AK107476.1
DB_XREF= gi:32992685
TID=Os.55093.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B09, full insert sequence.
FL= gb:AK107476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0437011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55093.1.S1_at--374--8091Chr03:1993425..1993449 (25 bp)
GGACGCTCTCCTTCTCGTGGGTGGA
LOC_Os03g04370
Os.55093.1.S1_at--1018--3771Chr03:1993568..1993592 (25 bp)
CTCGGCTACGTCTACGACGACGGGC
LOC_Os03g04370
Os.55093.1.S1_at--596--4391Chr03:1993614..1993638 (25 bp)
GCCAGTTCGGGATGGGCCCCAGCCA
LOC_Os03g04370
Os.55093.1.S1_at--217--7091Chr03:1993682..1993706 (25 bp)
GTCACCGTGGTCAATCCTCCGGCTA
LOC_Os03g04370
Os.55093.1.S1_at--686--8311Chr03:1993702..1993726 (25 bp)
GGCTACCGCACCGTACAGATGAGAT
LOC_Os03g04370
Os.55093.1.S1_at--594--5551Chr03:1993727..1993751 (25 bp)
GAAACCTTGTACATCAACATCGTAG
LOC_Os03g04370
Os.55093.1.S1_at--926--9691Chr03:1993740..1993764 (25 bp)
TCAACATCGTAGTAGCGTTCGGTGT
LOC_Os03g04370
Os.55093.1.S1_at--1078--4611Chr03:1993754..1993778 (25 bp)
GCGTTCGGTGTTACAAGTAGGACAT
LOC_Os03g04370
Os.55093.1.S1_at--281--8131Chr03:1993773..1993797 (25 bp)
GGACATGTAAAACGTATTCCATTGT
LOC_Os03g04370
Os.55093.1.S1_at--202--91Chr03:1993788..1993812 (25 bp)
ATTCCATTGTGATCTTGGTTCGCCG
LOC_Os03g04370
Os.55093.1.S1_at--549--9591Chr03:1993800..1993824 (25 bp)
TCTTGGTTCGCCGTTGTTGCAAATA
LOC_Os03g04370
Target Sequence 
GGACGCTCTCCTTCTCGTGGGTGGACGAGTCGCGGCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACG
CTCAACTACTGGGGGATCCAGCGGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGA
CGACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCCCTCGCCGGCCGAGGTACC
GGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTACCGCACCGTACAGATGAGATGAAACCTTGTACATCAAC
ATCGTAGTAGCGTTCGGTGTTACAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis