Browse Element(s) Details


OsAffx.12740.1.S1_s_at

Description tigr:9631.m00475
TID=OsAffx.12740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HR-like lesion-inducing
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0552011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12740.1.S1_s_at--667--8431Chr03:2720404..2720428 (25 bp)
GGCCTAAGTATAACGTCTTCACCAA
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--1135--2071Chr03:2720367..2720391 (25 bp)
ACATTTGGGAGTAGCAGTGCCTCAT
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--518--8991Chr03:2720256..2720280 (25 bp)
TGAAGCACATTGTTGCTGCTACCAT
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--355--9291Chr03:2719188..2719212 (25 bp)
TCCGAATTTGTGCAGCTCTTCATGA
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--793--6751Chr03:2719078..2719186 (25 bp)
GTTCACACAGAATTTGGCTCTCTTT
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--588--7591Chr03:2719033..2719057 (25 bp)
GGGCATGAAGAACTCCATTCCCAAG
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--319--10491Chr03:2718904..2718928 (25 bp)
TTACAGTACCAGTTGTGCTGCCCTT
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--14--7311Chr03:2718890..2718914 (25 bp)
GTGCTGCCCTTAGATGTATCGGATT
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--1008--6531Chr03:2718869..2718893 (25 bp)
GATTCATTTTTGAAGGGCACGACCC
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--516--271Chr03:2718800..2718824 (25 bp)
ATATGTACTCGCGATTTGTTTGTTG
LOC_Os03g05520
OsAffx.12740.1.S1_s_at--1156--6851Chr03:2718783..2718807 (25 bp)
GTTTGTTGAACTAGGCTTCCAAGGA
LOC_Os03g05520
Target Sequence 
GGCCTAAGTATAACGTCTTCACCAAAAATATTTCTGCACATTTGGGAGTAGCAGTGCCTCATGTTGAGTTGAAGCACATT
GTTGCTGCTACCATTGGTCTGAAGGGTCTGGGAGGTCTCCTTTTTATCCTGAGCAGTTCGTTTGGTGCTTATCTCCTGCT
GATTTACCTCGCTTTTATCACACCTGTTGTCTACGACTTCTACAACTACGACATGGAGAAGTCCGAATTTGTGCAGCTCT
TCATGAAGTTCACACAGAATTTGGCTCTCTTTGGGGCGCTTCTTTTCTTCCTGGGCATGAAGAACTCCATTCCCAAGAGG
CAGGCCAAGAAGAAGGCTCCCAAGTCGAAGACGAACTAGGGCGTTTTAGATAGCCATGGCCTCCGGCGGTGATGGGGGAC
AGTTTATTTTGGAGTACAAGCTTACAGTACCAGTTGTGCTGCCCTTAGATGTATCGGATTCATTTTTGAAGGGCACGACC
CTAATGAGGTGTGAGTGGAGGGTTAGGGGACTAGATTGTATCAGTATATGTACTCGCGATTTGTTTGTTGAACTAGGCTT
CCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12740.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis