Browse Element(s) Details


OsAffx.12799.1.S1_s_at

Description tigr:9631.m00866
TID=OsAffx.12799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0917011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12799.1.S1_s_at--757--8111Chr03:4759732..4759756 (25 bp)
GGACGAGTCCGAGAGCTTCCTGCTG
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--581--1831Chr03:4759676..4759700 (25 bp)
ACGCGATCCTTTCCTGATGCAGTGG
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--24--651Chr03:4759660..4759684 (25 bp)
ATGCAGTGGCTGAATCTTCTTCCTC
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--147--1591Chr03:4759619..4759643 (25 bp)
AGCTCTTGGTGTCCTGAACATTTTC
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--1070--6111Chr03:4759584..4759608 (25 bp)
GAGTGATGCTCTCCTTGATTAGCTA
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--575--10251Chr03:4759544..4759568 (25 bp)
TTTGGGTTTGATCATGCCATCGATT
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--152--511Chr03:4759526..4759550 (25 bp)
ATCGATTCTGTAGCATCAACCCCTG
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--107--4271Chr03:4759505..4759529 (25 bp)
CCTGGTCTGCTTGGTTTTTTCAATG
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--844--2911Chr03:4759469..4759493 (25 bp)
AAGGAGGTCTCAGTGCTTTGGTTTC
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--36--4891Chr03:4759455..4759479 (25 bp)
GCTTTGGTTTCTGCGAGTTGTGCAA
LOC_Os03g09170
OsAffx.12799.1.S1_s_at--352--1251Chr03:4759440..4759464 (25 bp)
AGTTGTGCAACCCTGCATGCAAACT
LOC_Os03g09170
Target Sequence 
GGACGAGTCCGAGAGCTTCCTGCTGCACAAGTACCCGTCGCTGGAGATCGACTGGGACGCGATCCTTTCCTGATGCAGTG
GCTGAATCTTCTTCCTCTCCCTGTTCTTGATCCAGCTCTTGGTGTCCTGAACATTTTCACAACTCAGAGAGTGATGCTCT
CCTTGATTAGCTACATGTTAATCTAGGTTTTGGGTTTGATCATGCCATCGATTCTGTAGCATCAACCCCTGGTCTGCTTG
GTTTTTTCAATGGCATTGCCAGGAAGGAGGTCTCAGTGCTTTGGTTTCTGCGAGTTGTGCAACCCTGCATGCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12799.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis