Browse Element(s) Details


OsAffx.12835.1.S1_at

Description tigr:9631.m01204
TID=OsAffx.12835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1278011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12780OsAffx.12835.1.S1_at11/113+6823743..6824357hypothetical protein
LOC_Os03g12790OsAffx.25076.1.S1_at11/113+6833233..6835499MATE efflux family protein, expressed
LOC_Os03g12800NANA3+6836992..6837476hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12835.1.S1_at--325--2031Chr03:6823774..6823798 (25 bp)
ACAACGAAAATGTGGCCAACAACGA
LOC_Os03g12780
OsAffx.12835.1.S1_at--572--7551Chr03:6823785..6823809 (25 bp)
GTGGCCAACAACGATGTGGACCCAA
LOC_Os03g12780
OsAffx.12835.1.S1_at--764--771Chr03:6823798..6823822 (25 bp)
ATGTGGACCCAATAGAGAGAGAAAC
LOC_Os03g12780
OsAffx.12835.1.S1_at--118--1351Chr03:6823815..6823839 (25 bp)
AGAGAAACGGCAAAAGCTAGCTCTA
LOC_Os03g12780
OsAffx.12835.1.S1_at--479--8611Chr03:6823841..6824252 (25 bp)
TGGTGAACACGACCGGGAGGAACGA
LOC_Os03g12780
OsAffx.12835.1.S1_at--420--4531Chr03:6824255..6824279 (25 bp)
GACGGAGAAAAATCAACTAACACTA
LOC_Os03g12780
OsAffx.12835.1.S1_at--922--3253Chr03:6824268..6824292 (25 bp)
CAACTAACACTATTCATCGTCTTCC
LOC_Os03g12780
OsAffx.12835.1.S1_at--875--9814Chr03:6824272..6824296 (25 bp)
TAACACTATTCATCGTCTTCCCTAA
LOC_Os03g12780
OsAffx.12835.1.S1_at--963--111Chr03:6824279..6824303 (25 bp)
ATTCATCGTCTTCCCTAACGGTGAA
LOC_Os03g12780
OsAffx.12835.1.S1_at--731--6951Chr03:6824289..6824313 (25 bp)
TTCCCTAACGGTGAAGCCGACGTGC
LOC_Os03g12780
OsAffx.12835.1.S1_at--763--1671Chr03:6824303..6824327 (25 bp)
AGCCGACGTGCTTCACGAGGATGCA
LOC_Os03g12780
Target Sequence 
ACAACGAAAATGTGGCCAACAACGATGTGGACCCAATAGAGAGAGAAACGGCAAAAGCTAGCTCTAGTGGTGAACACGAC
CGGGAGGAACGAAAGACGGAGAAAAATCAACTAACACTATTCATCGTCTTCCCTAACGGTGAAGCCGACGTGCTTCACGA
GGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis