Browse Element(s) Details


OsAffx.12866.1.S1_at

Description tigr:9631.m01426
TID=OsAffx.12866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F3M18.10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1485011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12866.1.S1_at--284--6991Chr03:8076947..8076971 (25 bp)
GTACGAGATGCATGCTTTTCCAAGC
LOC_Os03g14850
OsAffx.12866.1.S1_at--809--2451Chr03:8076905..8076929 (25 bp)
AACAAGGCCAATGAGCTCGCTATCC
LOC_Os03g14850
OsAffx.12866.1.S1_at--1156--9331Chr03:8076889..8076913 (25 bp)
TCGCTATCCTCTGTGGCGTGATGGT
LOC_Os03g14850
OsAffx.12866.1.S1_at--964--10711Chr03:8076865..8076889 (25 bp)
TTGCTGTTGTTTTTGTCTCTCCCAA
LOC_Os03g14850
OsAffx.12866.1.S1_at--350--9211Chr03:8076840..8076864 (25 bp)
TGCCAATGGCGGGATTTTCTCATTT
LOC_Os03g14850
OsAffx.12866.1.S1_at--281--7931Chr03:8076829..8076853 (25 bp)
GGATTTTCTCATTTGGCTACCCATC
LOC_Os03g14850
OsAffx.12866.1.S1_at--947--471Chr03:8076807..8076831 (25 bp)
ATCTGTCAGCTCTGTGGCAAATCGC
LOC_Os03g14850
OsAffx.12866.1.S1_at--126--3031Chr03:8076773..8076797 (25 bp)
AATGCTCCAAACAACACCAGTGTGA
LOC_Os03g14850
OsAffx.12866.1.S1_at--754--7371Chr03:8076752..8076776 (25 bp)
GTGAGTAGCTCAACCCAAAGCGGGA
LOC_Os03g14850
OsAffx.12866.1.S1_at--625--9531Chr03:8076675..8076699 (25 bp)
TCTACAAGCTTCCACAGATCAGAAT
LOC_Os03g14850
OsAffx.12866.1.S1_at--795--9071Chr03:8076604..8076628 (25 bp)
TGCTTCTCCTGCAGAGTGATTGTAG
LOC_Os03g14850
Target Sequence 
GTACGAGATGCATGCTTTTCCAAGCGCCACACTACCATCTTCAACAAGGCCAATGAGCTCGCTATCCTCTGTGGCGTGAT
GGTTGCTGTTGTTTTTGTCTCTCCCAATGCCAATGGCGGGATTTTCTCATTTGGCTACCCATCTGTCAGCTCTGTGGCAA
ATCGCTTCCTCGCCAATGCTCCAAACAACACCAGTGTGAGTAGCTCAACCCAAAGCGGGAGGGATGTGGAAATCCGTGAA
CTAGAACGTGAAGAAAGAGAGTTGAAAGAGCATCTACAAGCTTCCACAGATCAGAATAAGCTTCTGCGGGAGGCAATAGC
AGCAAGGGATGGAGGGCAATTGATGCTTCTCCTGCAGAGTGATTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis