Browse Element(s) Details


OsAffx.12868.1.S1_at

Description tigr:9631.m01433
TID=OsAffx.12868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1492011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified
LOC_Os03g14940NANA3+8123291..8124148retrotransposon protein, putative, unclassified
LOC_Os03g14950OsAffx.12869.1.S1_s_at11/113+8131605..8133696Patatin-like phospholipase family protein, expressed
LOC_Os03g14959NANA3+8138940..8139888NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12868.1.S1_at--237--3711Chr03:8115165..8115189 (25 bp)
CTAGCCATGGACGAGACTAAACATT
LOC_Os03g14920
OsAffx.12868.1.S1_at--237--2931Chr03:8114563..8114587 (25 bp)
AAGGACGGTCGCTGCTCCATGCATG
LOC_Os03g14920
OsAffx.12868.1.S1_at--988--6131Chr03:8114522..8114546 (25 bp)
GAGGGTGTCATTAATGGCGCTGCTA
LOC_Os03g14920
OsAffx.12868.1.S1_at--633--5811Chr03:8114465..8114489 (25 bp)
GACGCCAGCCTGAGGCGCATGATGA
LOC_Os03g14920
OsAffx.12868.1.S1_at--921--692Chr01:11671226..11671437 (25 bp)
ATGATGAACGCCGTCTTGGTGACGC
NONE
OsAffx.12868.1.S1_at--1152--5933Chr01:11671270..11671294 (25 bp)
GAGCACCGAGTTGCGGCTAGCTATG
NONE
OsAffx.12868.1.S1_at--541--10011Chr03:8114386..8114410 (25 bp)
TAGCTATGCCGGCTGCCTTGAAGAT
LOC_Os03g14920
OsAffx.12868.1.S1_at--463--4311Chr03:8114371..8114395 (25 bp)
CCTTGAAGATGCTCGGGCCATACAA
LOC_Os03g14920
OsAffx.12868.1.S1_at--1103--2471Chr03:8114348..8114372 (25 bp)
AACACCACGGCCTCGATGCCGGTGA
LOC_Os03g14920
OsAffx.12868.1.S1_at--359--2871Chr03:8114312..8114336 (25 bp)
AAGTGGATCCCCAGGGCAGCGATGA
LOC_Os03g14920
OsAffx.12868.1.S1_at--15--671Chr03:8114098..8114122 (25 bp)
ATGACATGTGGGACTTACAAGTCAG
LOC_Os03g14920
Target Sequence 
CTAGCCATGGACGAGACTAAACATTCACAAATCTCACCAGGGCTGGCCGCCTGGGCCCAAGGACGGTCGCTGCTCCATGC
ATGGCTCCGGCGACGACGGGAGGGTGTCATTAATGGCGCTGCTAGAGTAGGCGGAGCGGTGGCGACGGCGGCCGGGGACG
CCAGCCTGAGGCGCATGATGAACGCCGTCTTGGTGACGCCCACGCCGATCGTCGCCGCGAGCACCGAGTTGCGGCTAGCT
ATGCCGGCTGCCTTGAAGATGCTCGGGCCATACAACACCACGGCCTCGATGCCGGTGAGGTGCTGGAAGAAGTGGATCCC
CAGGGCAGCGATGACGATGCGCTGCACCGGCGGCGTCGGGTGCAGGAACGCCGAGGGAGCCGACGCTGACGCCGGCGACG
CAGCGGCCGGCGAGGAGTGCAGCGAAGTTGGGGGTGAGGCCCATGAGGACGGAGCCCGCGAGGAGATACAGGCGGCGAGA
TGGAGGAGGGAAGAGAGGGAGGAGGAAGAAGGGATAAGAGATAATGACATGTGGGACTTACAAGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis