Browse Element(s) Details


OsAffx.12885.1.S1_at

Description tigr:9631.m01638
TID=OsAffx.12885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12885.1.S1_at--27--2391Chr03:9274079..9274101 (23 bp)
AAACTATGGAGTTACTACTTCAGTA
LOC_Os03g16770
OsAffx.12885.1.S1_at--141--6051Chr03:9273620..9273644 (25 bp)
GAGATCATGGGCAGAACCTGCTCAA
LOC_Os03g16770
OsAffx.12885.1.S1_at--664--5431Chr03:9273607..9273631 (25 bp)
GAACCTGCTCAATGTGCAGACCTCA
LOC_Os03g16770
OsAffx.12885.1.S1_at--517--4971Chr03:9273558..9273582 (25 bp)
GCATCACCACGAAAAGCTTGCCTTG
LOC_Os03g16770
OsAffx.12885.1.S1_at--109--4931Chr03:9273543..9273567 (25 bp)
GCTTGCCTTGCAGAGCTTTATCTAT
LOC_Os03g16770
OsAffx.12885.1.S1_at--994--10411Chr03:9273526..9273550 (25 bp)
TTATCTATGATATCCCATCCCGAAT
LOC_Os03g16770
OsAffx.12885.1.S1_at--181--551Chr03:9273510..9273534 (25 bp)
ATCCCGAATTCCAGATCCAGAAAAA
LOC_Os03g16770
OsAffx.12885.1.S1_at--1112--5511Chr03:9273139..9273515 (25 bp)
GAAAAACGCGATCGTGCTTCGGGTT
LOC_Os03g16770
OsAffx.12885.1.S1_at--869--9551Chr03:9273087..9273111 (25 bp)
TCTTCTCAGACGATTTGCGGGCGAA
LOC_Os03g16770
OsAffx.12885.1.S1_at--125--4591Chr03:9272919..9272943 (25 bp)
GCGAAGGGACTCCACTCCTTTGGGA
LOC_Os03g16770
OsAffx.12885.1.S1_at--980--1631Chr03:9272886..9272910 (25 bp)
AGCCCAACCGCGCTTTTCATGAAAC
LOC_Os03g16770
Target Sequence 
AAACTATGGAGTTACTACTTCAGTAAACAGGAGATCATGGGCAGAACCTGCTCAATGTGCAGACCTCACGCCTGCACCAT
CCACTCCCACCTGCATCACCACGAAAAGCTTGCCTTGCAGAGCTTTATCTATGATATCCCATCCCGAATTCCAGATCCAG
AAAAACGCGATCGTGCTTCGGGTTTGGGTTTGGGGGGTGCATACCTGCGCCTCTTCTCAGACGATTTGCGGGCGAACTCT
GCGGCCGCCGACAGCCGTGCCGAGCGGACCATGCTGCCCCGCCTTCGTTCGCACCCATGCGCCGGCCTCGCGCCGTCGAA
GGCGACTGGGCGTACGACGATTTCTGGGGGAGATCGGAGGAGCCAGACGGAACGGCACGGCGAAGGGACTCCACTCCTTT
GGGAAACACCCGAGCCCAACCGCGCTTTTCATGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis