Browse Element(s) Details


OsAffx.12910.1.S1_at

Description tigr:9631.m01785
TID=OsAffx.12910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine phosphatase type 2c, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1815011/11Serine/threonine phosphatase type 2c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18140Os.8145.2.S1_at11/113+10127028..10132168expressed protein
LOC_Os03g18150OsAffx.12910.1.S1_at11/113+10142507..10144524Serine/threonine phosphatase type 2c, putative, expressed
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12910.1.S1_at--803--1231Chr03:10143929..10143953 (25 bp)
AGTTGACATTGCCAGGCCGCTTTAC
LOC_Os03g18150
OsAffx.12910.1.S1_at--1006--4511Chr03:10143944..10143968 (25 bp)
GCCGCTTTACATCAGCAACGACAAA
LOC_Os03g18150
OsAffx.12910.1.S1_at--279--2351Chr03:10143966..10143990 (25 bp)
AAAGCTTCTCGCATGACTGCTTGCA
LOC_Os03g18150
OsAffx.12910.1.S1_at--985--1971Chr03:10143981..10144005 (25 bp)
ACTGCTTGCAGGAGGCTCGTCGAAA
LOC_Os03g18150
OsAffx.12910.1.S1_at--549--911Chr03:10143993..10144017 (25 bp)
AGGCTCGTCGAAACTGCGGTTACTA
LOC_Os03g18150
OsAffx.12910.1.S1_at--182--7591Chr03:10144019..10144043 (25 bp)
GGGCTCGACTGACGATATCAGCATT
LOC_Os03g18150
OsAffx.12910.1.S1_at--518--3591Chr03:10144040..10144064 (25 bp)
CATTGTGATCATACAGCTGCAGCAA
LOC_Os03g18150
OsAffx.12910.1.S1_at--649--2151Chr03:10144052..10144076 (25 bp)
ACAGCTGCAGCAATTCTCAAGATAA
LOC_Os03g18150
OsAffx.12910.1.S1_at--388--8031Chr03:10144092..10144116 (25 bp)
GGAGGGAGAGACTGAACTCACACTC
LOC_Os03g18150
OsAffx.12910.1.S1_at--788--5471Chr03:10144105..10144129 (25 bp)
GAACTCACACTCCAGCTTATTAGCA
LOC_Os03g18150
OsAffx.12910.1.S1_at--382--4351Chr03:10144116..10144140 (25 bp)
CCAGCTTATTAGCACAGCGGTGGTA
LOC_Os03g18150
Target Sequence 
AGTTGACATTGCCAGGCCGCTTTACATCAGCAACGACAAAGCTTCTCGCATGACTGCTTGCAGGAGGCTCGTCGAAACTG
CGGTTACTAGGGGCTCGACTGACGATATCAGCATTGTGATCATACAGCTGCAGCAATTCTCAAGATAATTTTAACTTGTC
GTTGGAGGGAGAGACTGAACTCACACTCCAGCTTATTAGCACAGCGGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis