Browse Element(s) Details


OsAffx.12932.1.S1_at

Description tigr:9631.m01888
TID=OsAffx.12932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1912011/11P protein C-terminus containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein
LOC_Os03g19090Os.6269.1.S1_at11/113+10671364..10672937expressed protein
LOC_Os03g19104OsAffx.25139.1.S1_at11/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.2.S1_x_at7/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.3.S1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.27088.1.A1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.10263.1.S1_at2/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.45902.1.A1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.10222.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.54691.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.22442.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19120OsAffx.12932.1.S1_at11/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19120Os.57514.1.S1_x_at1/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19129NANA3+10694603..10694737NA
LOC_Os03g19140NANA3+10703073..10703738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g19150NANA3+10711296..10714341retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009813biological_processflavonoid biosynthesis
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12932.1.S1_at--1134--511Chr03:10686806..10686830 (25 bp)
ATCGACGTGACCAAGCTCCAGGCCG
LOC_Os03g19120
OsAffx.12932.1.S1_at--97--6191Chr03:10686608..10686632 (25 bp)
GAGGAGCCGAGCAGCCAGCCCAACA
LOC_Os03g19120
OsAffx.12932.1.S1_at--410--4251Chr03:10686545..10686569 (25 bp)
CCGTGCAGCGAGGAGACAGCCACTG
LOC_Os03g19120
OsAffx.12932.1.S1_at--592--4091Chr03:10686517..10686541 (25 bp)
CGACGTCGCTGGACCCGATGGAGAT
LOC_Os03g19120
OsAffx.12932.1.S1_at--849--1311Chr03:10686460..10686484 (25 bp)
AGATGGAGGCCCTTCTGTGCGGCGG
LOC_Os03g19120
OsAffx.12932.1.S1_at--427--1951Chr03:10686355..10686379 (25 bp)
ACTGGGACGGCTTCGCGGCCGACCT
LOC_Os03g19120
OsAffx.12932.1.S1_at--958--4431Chr03:10686304..10686328 (25 bp)
GCCTTGTCCAAGACGCGGGCGAGCC
LOC_Os03g19120
OsAffx.12932.1.S1_at--138--2771Chr03:10686295..10686319 (25 bp)
AAGACGCGGGCGAGCCAAACGGCTC
LOC_Os03g19120
OsAffx.12932.1.S1_at--1106--5851Chr03:10686284..10686308 (25 bp)
GAGCCAAACGGCTCGATGGGCTGCA
LOC_Os03g19120
OsAffx.12932.1.S1_at--391--2391Chr03:10686279..10686303 (25 bp)
AAACGGCTCGATGGGCTGCAGCTCG
LOC_Os03g19120
OsAffx.12932.1.S1_at--60--9051Chr03:10686263..10686287 (25 bp)
TGCAGCTCGGACGAGCTCGAGTCGT
LOC_Os03g19120
Target Sequence 
ATCGACGTGACCAAGCTCCAGGCCGCCGGGAAGCGCCGCGGCGGCCGGACCGCCGGGCAGTCGCGGAAGGGCGACAAGAA
GCGCGCGGAGGACGACCCGCCCAAGGAGACCGCCGCCGCCGACACGCCGTTGCCGGAGTCGAGCCCGCGGCGCGCGCAGA
GCGACGAGGCGCGGAGCGGCAGCGTGGTGGTCGACCCGGAGGAGCCGAGCAGCCAGCCCAACAACGGCAGCAGCGGCGGC
GGCGGCGGCACGCCGGACGGGCCGTGCAGCGAGGAGACAGCCACTGGGCCGACGTCGCTGGACCCGATGGAGATGGGCCT
CTGGGAGGTTGAGAGCGAGTTCGCCGAGATGGAGGCCCTTCTGTGCGGCGGTGTGGCGCCCGACGGCCCCGGGATACCGG
GGCTCGAGCCGCTGGACGTCGCGGCCCAGGCGGACGACCTGCTCGACATGGACTGGGACGGCTTCGCGGCCGACCTGTGG
GGCGATCCGGCCCAGAGGGGCGGCCTTGTCCAAGACGCGGGCGAGCCAAACGGCTCGATGGGCTGCAGCTCGGACGAGCT
CGAGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis