Browse Element(s) Details


OsAffx.12934.1.S1_at

Description tigr:9631.m01897
TID=OsAffx.12934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19200Os.14195.1.S1_at10/113+10751427..10754538TPR Domain containing protein, expressed
LOC_Os03g19210OsAffx.12934.1.S1_at11/113+10775369..10775596hypothetical protein
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12934.1.S1_at--685--10711Chr03:10775542..10775566 (25 bp)
TTGCTGCGGTCCTGCGGCTGCCTGC
LOC_Os03g19210
OsAffx.12934.1.S1_at--940--3831Chr03:10775521..10775545 (25 bp)
CTGCTTGCCGCTACAGCAATGCTTA
LOC_Os03g19210
OsAffx.12934.1.S1_at--956--9851Chr03:10775510..10775534 (25 bp)
TACAGCAATGCTTACTGCTGCGCTG
LOC_Os03g19210
OsAffx.12934.1.S1_at--1017--9151Chr03:10775492..10775516 (25 bp)
TGCGCTGCAGCATATTTTGGTGGTT
LOC_Os03g19210
OsAffx.12934.1.S1_at--1004--10811Chr03:10775476..10775500 (25 bp)
TTGGTGGTTTTGGACGCTGCCGGAA
LOC_Os03g19210
OsAffx.12934.1.S1_at--882--9171Chr03:10775459..10775483 (25 bp)
TGCCGGAATGGAATCAGCCGCACTT
LOC_Os03g19210
OsAffx.12934.1.S1_at--827--8491Chr03:10775451..10775475 (25 bp)
TGGAATCAGCCGCACTTGAGGGAAA
LOC_Os03g19210
OsAffx.12934.1.S1_at--1135--5091Chr03:10775440..10775464 (25 bp)
GCACTTGAGGGAAAGCTAGCGTCGT
LOC_Os03g19210
OsAffx.12934.1.S1_at--531--3711Chr03:10775425..10775449 (25 bp)
CTAGCGTCGTATAGCCATGGCCATT
LOC_Os03g19210
OsAffx.12934.1.S1_at--1053--8451Chr03:10775408..10775432 (25 bp)
TGGCCATTGGCCATTGCTACAGCAG
LOC_Os03g19210
OsAffx.12934.1.S1_at--478--3611Chr03:10775404..10775428 (25 bp)
CATTGGCCATTGCTACAGCAGAACA
LOC_Os03g19210
Target Sequence 
TTGCTGCGGTCCTGCGGCTGCCTGCTTGCCGCTACAGCAATGCTTACTGCTGCGCTGCAGCATATTTTGGTGGTTTTGGA
CGCTGCCGGAATGGAATCAGCCGCACTTGAGGGAAAGCTAGCGTCGTATAGCCATGGCCATTGGCCATTGCTACAGCAGA
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis