Browse Element(s) Details


Os.7016.1.S1_at

Description gb:AK062656.1
DB_XREF= gi:32972674
TID=Os.7016.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E12, full insert sequence.
FL= gb:AK062656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1922011/11negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19210OsAffx.12934.1.S1_at11/113+10775369..10775596hypothetical protein
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7016.1.S1_at--919--1571Chr03:10785294..10785318 (25 bp)
AGCTAAGTCGTTGGCTTCAATGGAG
LOC_Os03g19220
Os.7016.1.S1_at--261--2311Chr03:10783479..10783503 (25 bp)
AAAGGCCGCGGTTGAGACTCTCAAG
LOC_Os03g19220
Os.7016.1.S1_at--1--2711Chr03:10783354..10783475 (25 bp)
AAGCTCAAGAGAACGCCTCATCACC
LOC_Os03g19220
Os.7016.1.S1_at--211--4971Chr03:10783307..10783327 (21 bp)
GCATCAAGCTGAGCCGCGAGGCATA
LOC_Os03g19220
Os.7016.1.S1_at--999--8271Chr03:10783171..10783195 (25 bp)
GGCATATCAGAATGCAGCGGCAGCT
LOC_Os03g19220
Os.7016.1.S1_at--214--4691Chr03:10783155..10783179 (25 bp)
GCGGCAGCTGGAGACCTCGAAGCAA
LOC_Os03g19220
Os.7016.1.S1_at--105--6451Chr03:10783110..10783134 (25 bp)
GATCAGTGTTGTAGCCTGTCCTAAA
LOC_Os03g19220
Os.7016.1.S1_at--998--5531Chr03:10783072..10783096 (25 bp)
GAAACAGCCCAGCAACTCTGCATTT
LOC_Os03g19220
Os.7016.1.S1_at--826--1251Chr03:10783045..10783069 (25 bp)
AGATTAGCCTCTCTGGCAGTTGCAG
LOC_Os03g19220
Os.7016.1.S1_at--1153--9031Chr03:10783025..10783049 (25 bp)
TGCAGCCTCTATGTCTATCAGAATT
LOC_Os03g19220
Os.7016.1.S1_at--33--5471Chr03:10782998..10783022 (25 bp)
GAACGGATTAACCATTGCTCAGTGA
LOC_Os03g19220
Target Sequence 
AGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGA
TTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACAGCAACGGTTCA
AAGGCCGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGC
ATCAAGCTGAGCCGCGAGGCATATCAGAATGCAGCGGCAGCTGGAGACCTCGAAGCAACAAGGGGACAGGTGGACTAAGA
TCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGC
AGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis