Browse Element(s) Details


Os.55634.1.S1_at

Description gb:AK108450.1
DB_XREF= gi:32993659
TID=Os.55634.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C08, full insert sequence.
FL= gb:AK108450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1926011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55634.1.S1_at--820--5351Chr03:10810538..10810562 (25 bp)
GAAGATGACCCAGGAGGCTGACAAC
LOC_Os03g19260
Os.55634.1.S1_at--1049--2571Chr03:10810516..10810540 (25 bp)
AACGACGGCAATGCGTCCGAGAACC
LOC_Os03g19260
Os.55634.1.S1_at--453--1491Chr03:10810413..10810437 (25 bp)
AGCACCGGCCGGAGTTCCTGAGCAG
LOC_Os03g19260
Os.55634.1.S1_at--1009--5411Chr03:10810367..10810391 (25 bp)
GAAGCCGAGCCTGATCACCATCGAG
LOC_Os03g19260
Os.55634.1.S1_at--1161--6951Chr03:10810336..10810360 (25 bp)
GTAGCGCCGAAGAAGGTGTCCCATT
LOC_Os03g19260
Os.55634.1.S1_at--1050--7451Chr03:10810321..10810345 (25 bp)
GTGTCCCATTGGCTCTTCTGAGTTC
LOC_Os03g19260
Os.55634.1.S1_at--519--8192Chr07:19604730..19604749 (20 bp)
GGAAGCTTCTTAATTTGACTTGTCA
NONE
Os.55634.1.S1_at--581--8951Chr03:10810249..10810273 (25 bp)
TGACTTGTCATCTAATCTCTCTTTC
LOC_Os03g19260
Os.55634.1.S1_at--264--10371Chr03:10810219..10810243 (25 bp)
TTTTTCTTCTTTCTTGCTGATCCTC
LOC_Os03g19260
Os.55634.1.S1_at--685--6371Chr03:10810201..10810225 (25 bp)
GATCCTCTGCTGAATGCTTGTCAAT
LOC_Os03g19260
Os.55634.1.S1_at--1063--7071Chr03:10810182..10810206 (25 bp)
GTCAATTGTCATCATCTAGTCCGTC
LOC_Os03g19260
Target Sequence 
GAAGATGACCCAGGAGGCTGACAACGACGGCAATGCGTCCGAGAACCACGCGGCGGCGGCGGAGGCGGAGAGGAGGGAGG
AGACGGCGGCGGCGGCGAGGCCGCCGCCGGCGGACGGGTTCGAGGAGCACCGGCCGGAGTTCCTGAGCAGGGAGCTGTCG
AGCAGAGGGTGGAAGCCGAGCCTGATCACCATCGAGGAGCGCGTAGCGCCGAAGAAGGTGTCCCATTGGCTCTTCTGAGT
TCTGACCTCGTCGCCGACGACGACGAGATCAACAGGAAGCTTCTTAATTTGACTTGTCATCTAATCTCTCTTTCTTCTCT
TTTTCTTCTTTCTTGCTGATCCTCTGCTGAATGCTTGTCAATTGTCATCATCTAGTCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis