Browse Element(s) Details


Os.11491.1.S1_at

Description gb:AK063714.1
DB_XREF= gi:32973732
TID=Os.11491.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence.
FL= gb:AK063714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1929011/11mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11491.1.S1_at--644--7651Chr03:10827780..10827804 (25 bp)
GGGAGTCTTACTTCATGGCCATGGA
LOC_Os03g19290
Os.11491.1.S1_at--852--6371Chr03:10827975..10827996 (22 bp)
GATCGTTCCCGGATCTCAACGGAGG
LOC_Os03g19290
Os.11491.1.S1_at--1045--2671Chr03:10828277..10828301 (25 bp)
AAGCGTGAGCAAAGAGTCTCTCCAG
LOC_Os03g19290
Os.11491.1.S1_at--817--4371Chr03:10828594..10828618 (25 bp)
CCAACGTGCTCTCCGGCATATTGTG
LOC_Os03g19290
Os.11491.1.S1_at--813--3931Chr03:10828630..10828654 (25 bp)
CGGCAAATTAGCTGTCCGGAGTTTT
LOC_Os03g19290
Os.11491.1.S1_at--880--3951Chr03:10828646..10828670 (25 bp)
CGGAGTTTTAACTACCTGCATCTTA
LOC_Os03g19290
Os.11491.1.S1_at--578--9971Chr03:10828658..10828682 (25 bp)
TACCTGCATCTTAACTTCTCAAGTC
LOC_Os03g19290
Os.11491.1.S1_at--614--2851Chr03:10828678..10828702 (25 bp)
AAGTCTGCCATTGTTATGCTAGCTG
LOC_Os03g19290
Os.11491.1.S1_at--544--8191Chr03:10828712..10828736 (25 bp)
GGAAGTCTTCAGTGTAGCACTCGTT
LOC_Os03g19290
Os.11491.1.S1_at--443--5111Chr03:10828728..10828752 (25 bp)
GCACTCGTTGTAATTGGCATCTTGT
LOC_Os03g19290
Os.11491.1.S1_at--1140--631Chr03:10828753..10828777 (25 bp)
ATGCTTGATTTCCTGTGCTATCACG
LOC_Os03g19290
Target Sequence 
GGGAGTCTTACTTCATGGCCATGGAAGGGGAGGGTGGGGGCACGGGAGCCNNNNNCGACTCCACCGGCGCCAGGAANCGA
TCGTTCCCGGATCTCAACGGAGGGAACAGCAGCAAGTCAGCTGAGGCTATGGTGAAAAGCGTGAGCAAAGAGTCTCTCCA
GTGGGGGCTCGCGGCCGGGTTGCACTCGGGGCTGACCTACGGCCTGACGGAGGCGCGCGGGACGCACGACTGGAAGAACA
GCGTGGTGGCGGGCGCCCTCACCGGCGCGGCCGTCGCGCTCACCTCGGACCGCGCGTCGCACGAGCGGGTGGTGCAGTGC
GCCATCGCCGGCGCCGCGCTGTCCACGGCCGCCAACGTGCTCTCCGGCATATTGTGAGCCGCTCAGCCGGCAAATTAGCT
GTCCGGAGTTTTAACTACCTGCATCTTAACTTCTCAAGTCTGCCATTGTTATGCTAGCTGTTGGAGCTTGGAAGTCTTCA
GTGTAGCACTCGTTGTAATTGGCATCTTGTATGCTTGATTTCCTGTGCTATCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis