Browse Element(s) Details


OsAffx.12935.1.S1_at

Description tigr:9631.m01909
TID=OsAffx.12935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1933011/11Glycosyltransferase 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12935.1.S1_at--1064--9131Chr03:10844388..10844412 (25 bp)
TGCGAGACAGGTACGGCGAGCTCTT
LOC_Os03g19330
OsAffx.12935.1.S1_at--172--4831Chr03:10844464..10844488 (25 bp)
GCTCATCTACCTTCTGGTCACGCAA
LOC_Os03g19330
OsAffx.12935.1.S1_at--621--10611Chr03:10844475..10844499 (25 bp)
TTCTGGTCACGCAACGGCAGAGGTG
LOC_Os03g19330
OsAffx.12935.1.S1_at--595--1051Chr03:10844508..10844532 (25 bp)
AGGTGTTCATCGAGAGCTCCTACGA
LOC_Os03g19330
OsAffx.12935.1.S1_at--167--8811Chr03:10844525..10844549 (25 bp)
TCCTACGACCTCAACGGGTTCTGGG
LOC_Os03g19330
OsAffx.12935.1.S1_at--819--2651Chr03:10844636..10844660 (25 bp)
AAGCCGTGCCGGAGGTACGCCGACA
LOC_Os03g19330
OsAffx.12935.1.S1_at--257--8011Chr03:10844646..10844670 (25 bp)
GGAGGTACGCCGACAGCTACCCGGC
LOC_Os03g19330
OsAffx.12935.1.S1_at--358--4111Chr03:10844698..10844722 (25 bp)
CGCGTTCAACTTCGCGGACGACCAA
LOC_Os03g19330
OsAffx.12935.1.S1_at--665--9331Chr03:10844709..10844733 (25 bp)
TCGCGGACGACCAAATACTGAAGCT
LOC_Os03g19330
OsAffx.12935.1.S1_at--186--6111Chr03:10844750..10844774 (25 bp)
GAGTCGCTGAATACCACGGCCGTGC
LOC_Os03g19330
OsAffx.12935.1.S1_at--8--2591Chr03:10844786..10844810 (25 bp)
AACGAGACCGGCGAGCCGCTAGACG
LOC_Os03g19330
Target Sequence 
TGCGAGACAGGTACGGCGAGCTCTTCGCCGAGGAGCTCTCCGGCCGGCCGCCGTTCGAGGCCGACGACCAGTCGGCGCTC
ATCTACCTTCTGGTCACGCAACGGCAGAGGTGGGGGGACAAGGTGTTCATCGAGAGCTCCTACGACCTCAACGGGTTCTG
GGAGGGCATCGTGGACAAGTACGAGGAGCTGCGGCGGGCGGGGCGCGACGACGGCCGGTGGCCGTTCGTCACGCACTTCG
TCGGGTGCAAGCCGTGCCGGAGGTACGCCGACAGCTACCCGGCGGAGCGGTGCCGGCGCGGCATGGAGCGCGCGTTCAAC
TTCGCGGACGACCAAATACTGAAGCTGTACGGGTTCGCGCACGAGTCGCTGAATACCACGGCCGTGCGGCGCGTCAGGAA
CGAGACCGGCGAGCCGCTAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis