Browse Element(s) Details


OsAffx.31409.1.S1_s_at

Description tigr:9639.m03722
TID=OsAffx.31409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g192708/11universal stress protein family protein, expressed
LOC_Os11g406607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31409.1.S1_s_at--565--6252Chr11:23766798..23766822 (25 bp)
GATGGGGAGCCATGGCTATGGCCTG
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--375--4872Chr11:23766789..23766808 (20 bp)
GCTATGGCCTGTTCAAGAGGGCTCT
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--903--3692Chr11:23766569..23766807 (25 bp)
CTATGGCCTGTTCAAGAGGGCTCTG
NONE
OsAffx.31409.1.S1_s_at--934--10092Chr11:23766683..23766806 (25 bp)
TATGGCCTGTTCAAGAGGGCTCTGC
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--924--872Chr11:23766682..23766805 (25 bp)
ATGGCCTGTTCAAGAGGGCTCTGCT
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--1029--8452Chr11:23766681..23766804 (25 bp)
TGGCCTGTTCAAGAGGGCTCTGCTT
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--276--8432Chr11:23766680..23766803 (25 bp)
GGCCTGTTCAAGAGGGCTCTGCTTG
LOC_Os11g40660
OsAffx.31409.1.S1_s_at--900--4472Chr11:23766679..23766802 (25 bp)
GCCTGTTCAAGAGGGCTCTGCTTGG
LOC_Os11g40660
Target Sequence 
GATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31409.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis