Browse Element(s) Details


Os.8742.1.S1_at

Description gb:AK101765.1
DB_XREF= gi:32986974
TID=Os.8742.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064F11, full insert sequence.
FL= gb:AK101765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1925011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8742.1.S1_at--1142--8531Chr03:10803395..10803419 (25 bp)
TGGAGAAGGTGCTGTACGCGCACCC
LOC_Os03g19250
Os.8742.1.S1_at--1062--1451Chr03:10803392..10803416 (25 bp)
AGAAGGTGCTGTACGCGCACCCGGC
LOC_Os03g19250
Os.8742.1.S1_at--36--3931Chr03:10803256..10803280 (25 bp)
CGGCGACATCATGCGGTTCTGCAGG
LOC_Os03g19250
Os.8742.1.S1_at--530--2091Chr03:10803251..10803275 (25 bp)
ACATCATGCGGTTCTGCAGGGAGAG
LOC_Os03g19250
Os.8742.1.S1_at--694--991Chr03:10803102..10803126 (25 bp)
AGGATGTGAGCTCCTCTTTTGCCTC
LOC_Os03g19250
Os.8742.1.S1_at--838--10391Chr03:10803086..10803110 (25 bp)
TTTTGCCTCTGCACTCGGCTGGTTG
LOC_Os03g19250
Os.8742.1.S1_at--112--5111Chr03:10803076..10803100 (25 bp)
GCACTCGGCTGGTTGCTGTCGTCGT
LOC_Os03g19250
Os.8742.1.S1_at--701--8451Chr03:10803051..10803075 (25 bp)
TGTGTTCTTCGGATAAAAGGATTTG
LOC_Os03g19250
Os.8742.1.S1_at--809--2291Chr03:10803036..10803060 (25 bp)
AAAGGATTTGGGTTGCAATGCTGTT
LOC_Os03g19250
Os.8742.1.S1_at--877--2371Chr03:10803005..10803029 (25 bp)
AAACTGTTCCGTCAAAACTGATGTC
LOC_Os03g19250
Os.8742.1.S1_at--72--6711Chr03:10803000..10803024 (25 bp)
GTTCCGTCAAAACTGATGTCCCCAT
LOC_Os03g19250
Target Sequence 
TGGAGAAGGTGCTGTACGCGCACCCGGCGGTGCTGGAGGCGTCGGTGGTGGCGAGGGCGGACGAGCAGTGGGGGGAGTCN
CCGTGCGCGTTCGTGACGCTCAAGGAAGGCGCCGACAGCTCCGACGAGGCGGCGGTGGCCGGCGACATCATGCGGTTCTG
CAGGGAGAGGATGCCNGGGGTACTGGGTGCCCAAGTCGGTGGTGTTCGGGCCGCTGCCCAAGACGGCGACGGGGAAGATC
AAGAAGCACGAGCTGAGGACCAAGGCCAAGGAGCTCGGCCCCGTCAAGAAGAGCAGGATGTGAGCTCCTCTTTTGCCTCT
GCACTCGGCTGGTTGCTGTCGTCGTTGTGTTCTTCGGATAAAAGGATTTGGGTTGCAATGCTGTTGTATGNAAACTGTTC
CGTCAAAACTGATGTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis