Browse Element(s) Details


Os.14974.1.S1_at

Description gb:BI809583
DB_XREF= gi:15856771
DB_XREF=F013C06
CLONE=F013C06
TID=Os.14974.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14974 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188316.1 (A.thaliana) AMP-binding protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1924010/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19210OsAffx.12934.1.S1_at11/113+10775369..10775596hypothetical protein
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14974.1.S1_at--1124--8131Chr03:10795400..10795424 (25 bp)
GGACAGGGCTAAGGACATCATCATC
LOC_Os03g19240
Os.14974.1.S1_at--80--8551Chr03:10795344..10795368 (25 bp)
TGGAGAAGGCGGTGTACCAGCACCC
LOC_Os03g19240
Os.14974.1.S1_at--547--371Chr03:10795038..10795062 (25 bp)
ATCAATCTTGAGCTCTCTGAATTTG
LOC_Os03g19240
Os.14974.1.S1_at--581--3071Chr03:10795035..10795059 (25 bp)
AATCTTGAGCTCTCTGAATTTGCTG
LOC_Os03g19240
Os.14974.1.S1_at--525--10771Chr03:10795031..10795055 (25 bp)
TTGAGCTCTCTGAATTTGCTGCGCT
LOC_Os03g19240
Os.14974.1.S1_at--948--4811Chr03:10795027..10795051 (25 bp)
GCTCTCTGAATTTGCTGCGCTCTGA
LOC_Os03g19240
Os.14974.1.S1_at--95--10731Chr03:10795016..10795040 (25 bp)
TTGCTGCGCTCTGAACTGAACTCTT
LOC_Os03g19240
Os.14974.1.S1_at--263--9131Chr03:10795012..10795036 (25 bp)
TGCGCTCTGAACTGAACTCTTGTTA
LOC_Os03g19240
Os.14974.1.S1_at--998--9371Chr03:10794958..10794982 (25 bp)
TCGTTGCCACGAATTTTAGGACCGT
LOC_Os03g19240
Os.14974.1.S1_at--122--2571Chr03:10794927..10794951 (25 bp)
AACTGTAATCTCATACTCATATTTT
LOC_Os03g19240
Os.14974.1.S1_at--340--7071NONE
GTAATCTCATACTCATATTTTTGTA
NONE
Target Sequence 
GGACAGGGCTAAGGACATCATCATCTCCGGCGGGGAGAACATCAGCAGCCTGGAGGTGGAGAAGGCGGTGTACCAGCACC
CGGCGGTGCTGGAGGCGTCNGTGGTGGCGCGGGCCGACGAGCANTGGGGGGAGTCGCCATGCGCGTTCGTGACGCCCAAG
GACGGCGCCGACAGCTCCGACGAGGCGGCGCTCGCCGGCGACATCATNCGGNTCTGCCGGGAGAGGCTGCCGGGGTACTG
GGTGCCCAAGTCCGTCGTGTTCNGNCCGCTGNCCAAGACNGCGACGGGGAAGATCAAGAAGCACGAGCTGAGGGCCAAGG
CCAAGNANTTGGGCCCGGTCCNGNAAGAGCAGGATGTGAGCCNATCAATCTTGAGCTCTCTGAATTTGCTGCGCTCTGAA
CTGAACTCTTGTTACTGTATCTGCTATGGTCATCGTCACATCATCGTTGCCACGAATTTTAGGACCGTGTTGTAAACTGT
AATCTCATACTCATATTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis