Browse Element(s) Details


Os.49103.1.S1_at

Description gb:AK105101.1
DB_XREF= gi:32990310
TID=Os.49103.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D03, full insert sequence.
FL= gb:AK105101.1 gb:AK105005.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1931011/11Glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49103.1.S1_at--942--7031Chr03:10833423..10833447 (25 bp)
GTACAACCTGCACGGCTTCTGGGCG
LOC_Os03g19310
Os.49103.1.S1_at--418--9471Chr03:10833406..10833430 (25 bp)
TCTGGGCGGACATCGTCGACAGGTA
LOC_Os03g19310
Os.49103.1.S1_at--185--6111Chr03:10833188..10833212 (25 bp)
GAGTCGCTCGACACCATGGCCGTGC
LOC_Os03g19310
Os.49103.1.S1_at--620--8531Chr03:10833133..10833157 (25 bp)
TGGACGCCGACAACCAGGAGCTCGG
LOC_Os03g19310
Os.49103.1.S1_at--714--2351Chr03:10833086..10833110 (25 bp)
AAAGCCCGCAAAAAGAAGACATCCA
LOC_Os03g19310
Os.49103.1.S1_at--677--5371Chr03:10833072..10833096 (25 bp)
GAAGACATCCAGAGCAGCCAGGCCC
LOC_Os03g19310
Os.49103.1.S1_at--1096--4331Chr03:10833055..10833079 (25 bp)
CCAGGCCCATGTAATGACGAAGATC
LOC_Os03g19310
Os.49103.1.S1_at--340--5351Chr03:10833037..10833061 (25 bp)
GAAGATCATATCGAAAACCGTGTAA
LOC_Os03g19310
Os.49103.1.S1_at--429--6911Chr03:10832948..10832972 (25 bp)
GTATGAACGAGGACCGGAGATATTT
LOC_Os03g19310
Os.49103.1.S1_at--93--2251Chr03:10832899..10832923 (25 bp)
AAATTCTCACTTTATGTACGAGCTA
LOC_Os03g19310
Os.49103.1.S1_at--1089--5891Chr03:10832880..10832904 (25 bp)
GAGCTAATTCCGGTTACTTGACTTA
LOC_Os03g19310
Target Sequence 
GTACAACCTGCACGGCTTCTGGGCGGACATCGTCGACAGGTACGAGGAGATNCGGCGGCAGTGGCGCCACCCGGGGCTCG
GCGACGACCGGTGGCCGCTGATCACGCACTTCGTCGGCTGCAAGCCGTGCGGCGGGGACGACGCGAGCTACGACGGGGAG
CGCTGCCGGCGAGGCATGGACCGGGCCTTCAACTTCGCCGACGACCAGATACTGGAGCTGTACGGGTTCGCGCACGAGTC
GCTCGACACCATGGCCGTGCGCCGCGTCAGGAACGACACCGGCCGGCCGCTGGACGCCGACAACCAGGAGCTCGGCCGCC
TACTGCACCCAACATTCAAAGCCCGCAAAAAGAAGACATCCAGAGCAGCCAGGCCCATGTAATGACGAAGATCATATCGA
AAACCGTGTAATTATGGAGATATGATACTTTGATTAGGTTGTATTTTCGTTTGGAGATATTTCTTGAATATTGATGTATG
AACGAGGACCGGAGATATTTAATGTGTTGTTTTTACACCCAAAAAAATTCTCACTTTATGTACGAGCTAATTCCGGTTAC
TTGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis