Browse Element(s) Details


OsAffx.13004.1.S1_at

Description tigr:9631.m02392
TID=OsAffx.13004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g245409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13004.1.S1_at--570--4091Chr03:13968686..13968710 (25 bp)
CGACGTCGTCAGAAGGCGCAGAAAC
LOC_Os03g24540
OsAffx.13004.1.S1_at--597--5291Chr03:13968680..13968699 (20 bp)
GAAGGCGCAGAAACCCCGCGCAGAT
LOC_Os03g24540
OsAffx.13004.1.S1_at--194--6251Chr03:13968412..13968436 (25 bp)
GATGGATCGATTGCTTCTGAAAGAA
LOC_Os03g24540
OsAffx.13004.1.S1_at--679--5231Chr03:13967394..13967418 (25 bp)
GAATACCATGTCCTTGATAGCTCCA
LOC_Os03g24540
OsAffx.13004.1.S1_at--340--10791Chr03:13967381..13967405 (25 bp)
TTGATAGCTCCACATATTACGCGCC
LOC_Os03g24540
OsAffx.13004.1.S1_at--546--10191Chr03:13967367..13967391 (25 bp)
TATTACGCGCCGATGTCTTACCCTA
LOC_Os03g24540
OsAffx.13004.1.S1_at--635--10471Chr03:13967350..13967374 (25 bp)
TTACCCTACAGGTCTGGACGTCGAG
LOC_Os03g24540
OsAffx.13004.1.S1_at--732--3911NONE
CTGGACGTCGAGAGCCAGCCTGTGT
NONE
OsAffx.13004.1.S1_at--1026--1672Chr07:8911282..8911306 (25 bp)
AGCCTGTGTGGCAGACGACAAACCT
NONE
OsAffx.13004.1.S1_at--355--4231NONE
CCTGAGTGGTTTGGAACAGTCCCCA
NONE
OsAffx.13004.1.S1_at--341--8511Chr03:13965611..13966043 (25 bp)
TGGAACAGTCCCCAGGGTATCCTAT
LOC_Os03g24540
Target Sequence 
CGACGTCGTCAGAAGGCGCAGAAACCCCGCGCAGATGGATCGATTGCTTCTGAAAGAAAGGGTAATAATTATCAATGTGG
TAAAAGATTAAGATATTCATGGCCAAACTTTCCAGAGGATATTGAATACCATGTCCTTGATAGCTCCACATATTACGCGC
CGATGTCTTACCCTACAGGTCTGGACGTCGAGAGCCAGCCTGTGTGGCAGACGACAAACCTGAGTGGTTTGGAACAGTCC
CCAGGGTATCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis