Browse Element(s) Details


Os.8894.1.S1_at

Description gb:AK101285.1
DB_XREF= gi:32986494
TID=Os.8894.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033E17, full insert sequence.
FL= gb:AK059166.1 gb:AK101285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2458010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g24630Os.41695.3.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.5.S1_x_at9/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.15.S1_s_at8/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.2.S1_x_at7/113+14005652..14008054hypothetical protein
LOC_Os03g24630Os.41695.4.S1_x_at1/113+14005652..14008054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8894.1.S1_at--968--7791Chr03:13981031..13981055 (25 bp)
GGTCTTTATTGCTCTCAACTTGGCA
LOC_Os03g24580
Os.8894.1.S1_at--647--2691Chr03:13980904..13980927 (24 bp)
AAGCTCAATACGTTGGGTCTTCTTC
LOC_Os03g24580
Os.8894.1.S1_at--942--7691Chr03:13980890..13980914 (25 bp)
GGGTCTTCTTCCAACAAATGCATCA
LOC_Os03g24580
Os.8894.1.S1_at--529--3431Chr03:13980867..13980891 (25 bp)
CAGATTGGGTGTTTTCACTGGCTCC
LOC_Os03g24580
Os.8894.1.S1_at--133--1951NONE
ACTGGCTCCTGCTCGGGAGGTTGAA
NONE
Os.8894.1.S1_at--376--3111Chr03:13979740..13979764 (25 bp)
AATATGCTGGTGGAGGGATCCCCTT
LOC_Os03g24580
Os.8894.1.S1_at--1128--531Chr03:13979723..13979747 (25 bp)
ATCCCCTTGCACTGAAACCTTTATG
LOC_Os03g24580
Os.8894.1.S1_at--864--1731Chr03:13979707..13979731 (25 bp)
ACCTTTATGTGCTTCAGTTAGTACT
LOC_Os03g24580
Os.8894.1.S1_at--506--6611Chr03:13979360..13979384 (25 bp)
GTTGGCCTGTTAGTGCTAGGGACCA
LOC_Os03g24580
Os.8894.1.S1_at--76--8091Chr03:13979341..13979365 (25 bp)
GGACCAATTTGTTGCCCTTATATAC
LOC_Os03g24580
Os.8894.1.S1_at--1109--9151Chr03:13979329..13979353 (25 bp)
TGCCCTTATATACAACACCTTTACG
LOC_Os03g24580
Target Sequence 
GGTCTTTATTGCTCTCAACTTGGCAGCTATGGGTTTAGGTGTATGGAAGCTCAATACGTTGGGTCTTCTTCCAACAAATG
CATCAGATTGGGTGTTTTCACTGGCTCCTGCTCGGGAGGTTGAATATGCTGGTGGAGGGATCCCCTTGCACTGAAACCTT
TATGTGCTTCAGTTAGTACTTATTAAAGTTTTACCACTTGGAAGATGGTGTCTGTACTAAGCGAAAAATTACCCTGCAGA
TGGGACAAGTCTGGTTTTTGTGAGGATCATATTTCAGCACCTGTACTAAACTTGCACTATATCTTGAGACAAGTAACTTA
CAATTTCCNTTGACCCCTTNTTGTTTACCCTGGTTATTTATACAGAGTCAGTTGATTCTTAGTAAAGNTGAATTATGTTG
TTANNANNANNNANNNNNNTCCTGCAGAGGCTCTTGATACCAGCCTTCTTTTCCTTAAGGCAATCTTGGTTTGATTATGA
GCTGTGAGGCTCAAGATGGAATATGTTGGCCTGTTAGTGCTAGGGACCAATTTGTTGCCCTTATATACAACACCTTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis