Browse Element(s) Details


OsAffx.13016.2.S1_at

Description tigr:9637.m01293
TID=OsAffx.13016.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1560010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15550Os.56250.1.S1_at11/119+9500360..9501868F-box domain containing protein, expressed
LOC_Os09g15560Os.55706.1.S1_at11/119+9504693..9506076F-box domain containing protein, expressed
LOC_Os09g15570OsAffx.29856.1.S1_at11/119+9510313..9512124F-box domain containing protein, expressed
LOC_Os09g15580OsAffx.30126.2.S1_at11/119+9513235..9516346hypothetical protein
LOC_Os09g15580OsAffx.30126.2.S1_x_at10/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.16896.1.S1_at5/119+9513235..9516346hypothetical protein
LOC_Os09g15580Os.36979.1.S1_x_at3/119+9513235..9516346hypothetical protein
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13016.2.S1_at--249--3971Chr09:9527888..9527912 (25 bp)
CGGTTCACGACCACGAGGCAGTGGT
LOC_Os09g15600
OsAffx.13016.2.S1_at--414--8271Chr09:9527872..9527896 (25 bp)
GGCAGTGGTTGCGTTCTTTTGATAC
LOC_Os09g15600
OsAffx.13016.2.S1_at--179--9151Chr09:9527865..9527887 (23 bp)
TGCGTTCTTTTGATACTGGTAGGAG
LOC_Os09g15600
OsAffx.13016.2.S1_at--1036--5015Chr01:38498512..38498536 (25 bp)
GCAGGTGCCCATCTTGAGGTACATG
NONE
OsAffx.13016.2.S1_at--364--9592Chr09:9527125..9527149 (25 bp)
TCTTGAGGTACATGACGGGCCCGTA
LOC_Os09g15600
OsAffx.13016.2.S1_at--942--672Chr09:9527114..9527138 (25 bp)
ATGACGGGCCCGTACTTGCGCTCTA
LOC_Os09g15600
OsAffx.13016.2.S1_at--322--10711Chr09:9527099..9527123 (25 bp)
TTGCGCTCTAGCGACGCCAGGTCAG
LOC_Os09g15600
OsAffx.13016.2.S1_at--930--5871NONE
GAGCACGACGGGAGGCAAACATTGT
NONE
OsAffx.13016.2.S1_at--1070--2391Chr09:9526004..9526028 (25 bp)
AAACATTGTCTCATCAACTCACGGC
LOC_Os09g15600
OsAffx.13016.2.S1_at--441--4251Chr09:9525949..9525973 (25 bp)
CCGTGAGTTCGTTGTGCCACAACTG
LOC_Os09g15600
OsAffx.13016.2.S1_at--1120--7271Chr09:9525936..9525960 (25 bp)
GTGCCACAACTGCAAGAGCTGTATA
LOC_Os09g15600
Target Sequence 
CGGTTCACGACCACGAGGCAGTGGTTGCGTTCTTTTGATACTGGTAGGAGTGGTCAGCGGCAGCGGGATGACGACGGGAC
GGGCGGCGGCTGACGCCTCCGCCCTGCCGCGCAGCAGCCGGGCAGCCTCGTCGTGGCGCACCGGCAAGAACGCCCTCGCC
GCGCACGGCGACGACGCCACCACGACGCCGCAGGTGCCCATCTTGAGGTACATGACGGGCCCGTACTTGCGCTCTAGCGA
CGCCAGGTCAGCGTGCGGGGCCGGGCCGACGAGCGGGAGCGCGTCGAGGACGGGGATGCCCGAGGGTCCCGGGGGGCAGG
TGGTAGGAGCGGAGGGAGAGGTCGAGGAGGAGGCAGAGGAAGGCGGCGGAGAGCACGACGGGAGGCAAACATTGTCTCAT
CAACTCACGGCCATGGCGATCAATGGCGGCCGCCGACCTCGCCGTGAGTTCGTTGTGCCACAACTGCAAGAGCTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13016.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis