Browse Element(s) Details


OsAffx.13094.2.S1_at

Description tigr:9632.m00229
TID=OsAffx.13094.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0322010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03190Os.8747.3.S1_x_at1/114+1330680..1336174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03200OsAffx.9826.1.S1_at1/114+1339232..1344203hypothetical protein
LOC_Os04g03210OsAffx.3709.1.S1_at11/114+1345753..1349313Leucine Rich Repeat family protein
LOC_Os04g03220OsAffx.13094.2.S1_at10/114+1353230..1354970hypothetical protein
LOC_Os04g03230OsAffx.13637.1.S1_at11/114+1359436..1361527hypothetical protein
LOC_Os04g03230OsAffx.17226.1.S1_at1/114+1359436..1361527hypothetical protein
LOC_Os04g03240NANA4+1365662..1367213Transposable element protein, putative, Transposase_28
LOC_Os04g03250OsAffx.22699.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified
LOC_Os04g03250OsAffx.8201.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified
LOC_Os04g03260NANA4+1376054..1378803hypothetical protein
LOC_Os04g03270NANA4+1379012..1380025retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13094.2.S1_at--236--6611NONE
GATTGGCCGTATGTCTTTAAGGCAA
NONE
OsAffx.13094.2.S1_at--1108--5131Chr04:1353656..1353680 (25 bp)
GCAAAAGATTGCCTCAACTGTGTCA
LOC_Os04g03220
OsAffx.13094.2.S1_at--347--6592Chr05:16470167..16470190 (24 bp)
GATTGCCTCAACTGTGTCAGGTGCA
NONE
OsAffx.13094.2.S1_at--371--9631Chr04:1353634..1353658 (25 bp)
TCAGGTGCAAGACAAGACGCGAAGC
LOC_Os04g03220
OsAffx.13094.2.S1_at--1106--4511Chr04:1353498..1353522 (25 bp)
GCCCTAGCGGCCAGATGGGCCATCG
LOC_Os04g03220
OsAffx.13094.2.S1_at--1070--6251Chr04:1353485..1353509 (25 bp)
GATGGGCCATCGGACCGTCATCGTG
LOC_Os04g03220
OsAffx.13094.2.S1_at--699--8431Chr04:1353454..1353478 (25 bp)
GGCCATCAGGCCGTCATCGTGTTTA
LOC_Os04g03220
OsAffx.13094.2.S1_at--163--8412Chr03:16221430..16221454 (25 bp)
GGCCCGGCCCATTTACGGGCTGTGT
NONE
OsAffx.13094.2.S1_at--1011--112Chr03:16221440..16221464 (25 bp)
ATTTACGGGCTGTGTCGGACCGTGC
NONE
OsAffx.13094.2.S1_at--982--7432Chr04:1353287..1353311 (25 bp)
GTGTCGGACCGTGCTTTCTACCGTG
LOC_Os04g03220
OsAffx.13094.2.S1_at--742--9051Chr04:1353276..1353300 (25 bp)
TGCTTTCTACCGTGCCGGGCCGTCG
LOC_Os04g03220
Target Sequence 
GATTGGCCGTATGTCTTTAAGGCAAAAGATTGCCTCAACTGTGTCAGGTGCAAGACAAGACGCGAAGCGGGAGGAGGCGC
CGAGCGTGCGCGACGACAGAGGCGCGGGTCACGGGCGCGACGTCGAGTCGAAGACGAAGGACGAAGTAGCGCCGCTCAGC
CTTTCTCCGATGCGAGTGCGCCCTAGCGGCCAGATGGGCCATCGGACCGTCATCGTGCTTACGGGCCATCAGGCCGTCAT
CGTGTTTACGGGCCATCGGGCCATCATCGTGCCGTGCCGGCCCAAGCACGGCCCACTGGTCATGCCGTGCCGTGCCGCCC
GTCGTGCTCGTTGTGTAGGCCCAGGCACGGCCCATGTACGGGCCATGCCGGCCCGGCCCATTTACGGGCTGTGTCGGACC
GTGCTTTCTACCGTGCCGGGCCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13094.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis