Browse Element(s) Details


OsAffx.13112.1.S1_at

Description tigr:9631.m02895
TID=OsAffx.13112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29650NANA3+16858656..16865217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29660Os.46995.1.S1_x_at1/113+16865537..16868449retrotransposon protein, putative, unclassified
LOC_Os03g29680Os.49170.1.S1_at11/113+16875049..16877259EARLY flowering 4 protein, putative, expressed
LOC_Os03g29690OsAffx.13112.1.S1_at11/113+16879732..16880450hypothetical protein
LOC_Os03g29710OsAffx.16205.1.S1_at2/113+16887490..16890376hypothetical protein
LOC_Os03g29710OsAffx.25292.1.S1_at1/113+16887490..16890376hypothetical protein
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13112.1.S1_at--1056--5811Chr03:16880385..16880409 (25 bp)
GACCTCGCCACCTCAACTAGAGAAG
LOC_Os03g29690
OsAffx.13112.1.S1_at--1014--1311Chr03:16880355..16880379 (25 bp)
AGAGGACCGTCACCCACTGGAGAAG
LOC_Os03g29690
OsAffx.13112.1.S1_at--1074--8551Chr03:16880324..16880348 (25 bp)
TGGAGGAGCCCGATGTTGAGATATC
LOC_Os03g29690
OsAffx.13112.1.S1_at--2--6291Chr03:16880313..16880337 (25 bp)
GATGTTGAGATATCGCGCCGCCGCC
LOC_Os03g29690
OsAffx.13112.1.S1_at--1106--4531Chr03:16880291..16880315 (25 bp)
GCCCGATTTGCGATGCTGGAGCTGA
LOC_Os03g29690
OsAffx.13112.1.S1_at--737--8311Chr03:16880221..16880245 (25 bp)
GGCTCGTCCTCAACTCTCATGAGAG
LOC_Os03g29690
OsAffx.13112.1.S1_at--317--5612Chr09:7790193..7790282 (24 bp)
GACAATGGCGGTCGAGCTCCCACGC
NONE
OsAffx.13112.1.S1_at--719--2271Chr03:16880153..16880177 (25 bp)
AAATCTGTGCCACCGTCGTTGAGGT
LOC_Os03g29690
OsAffx.13112.1.S1_at--250--1031Chr03:16880132..16880156 (25 bp)
AGGTCCTCGCCCTCTAAGGAGAGTA
LOC_Os03g29690
OsAffx.13112.1.S1_at--798--3931Chr03:16879846..16879870 (25 bp)
CGGCGGTGCCAGAGTTCATTGCCGA
LOC_Os03g29690
OsAffx.13112.1.S1_at--279--6191Chr03:16879797..16879821 (25 bp)
GAGGCTGCGGTATCACCGGTGAACT
LOC_Os03g29690
Target Sequence 
GACCTCGCCACCTCAACTAGAGAAGGGAGGAGAGGACCGTCACCCACTGGAGAAGGTGAAGTGGAGGAGCCCGATGTTGA
GATATCGCGCCGCCGCCCGATTTGCGATGCTGGAGCTGATGTCCAGAGAGGGGAGAGGAGAGCCGGGGTCTGTCGCCGTG
CCATGGCTCGTCCTCAACTCTCATGAGAGGGGAGAGGCGACGACAATGGCGGTCGAGCTCCCACGCCACTCCAAATCTGT
GCCACCGTCGTTGAGGTCCTCGCCCTCTAAGGAGAGTAGGAGTGGAGGGGCACCGTGGCTCTGCCGCCGCCTCGGCCTCC
TCGACCACCGCCGCATCTCCGTGTGGGTTGGGCTCGAGCGGCGTCCAGGAGTGGAGAGGTGCCGCGATGGGGAGAAGGAA
GAGGCTGGCGGCGGTGCCAGAGTTCATTGCCGAGGTGGGGAGAGTGGGGAGAGGCCGGAGGCTGCGGTATCACCGGTGAA
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis