Browse Element(s) Details


OsAffx.13169.1.S1_at

Description tigr:9631.m03269
TID=OsAffx.13169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3331011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33260NANA3+18982365..18984612retrotransposon protein, putative, unclassified
LOC_Os03g33270NANA3+18987852..18988088retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33280NANA3+18989291..18993294retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33290NANA3+18994484..18997731retrotransposon protein, putative, unclassified
LOC_Os03g33300OsAffx.5954.5.S1_x_at4/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33300Os.51990.1.S1_at1/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33300OsAffx.576.1.A1_at1/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33310OsAffx.13169.1.S1_at11/113+19007126..19007968hypothetical protein
LOC_Os03g33319NANA3+19011272..19013696retrotransposon protein, putative, unclassified
LOC_Os03g33328NANA3+19014601..19020342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33340NANA3+19023119..19027234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33360Os.53142.1.S1_at3/113+19029527..19032039retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13169.1.S1_at--1118--3611Chr03:19007183..19007207 (25 bp)
CTTGAAGGAGAAACACCGGCGAATC
LOC_Os03g33310
OsAffx.13169.1.S1_at--566--3931Chr03:19007199..19007223 (25 bp)
CGGCGAATCAAGTCATCCCAGTGGA
LOC_Os03g33310
OsAffx.13169.1.S1_at--463--7131Chr03:19007210..19007234 (25 bp)
GTCATCCCAGTGGAAAACTACACAA
LOC_Os03g33310
OsAffx.13169.1.S1_at--30--9171Chr03:19007264..19007288 (25 bp)
TGCCCAGCTCCCCAGCAAATATGGA
LOC_Os03g33310
OsAffx.13169.1.S1_at--690--3411Chr03:19007276..19007300 (25 bp)
CAGCAAATATGGAGCCGGCCGGCAA
LOC_Os03g33310
OsAffx.13169.1.S1_at--839--8411Chr03:19007292..19007464 (25 bp)
GGCCGGCAAACTCACTGCCTATTAA
LOC_Os03g33310
OsAffx.13169.1.S1_at--463--3331Chr03:19007456..19007476 (21 bp)
CACTGCCTATTAAAGCGAGACGTCT
LOC_Os03g33310
OsAffx.13169.1.S1_at--880--9291Chr03:19007501..19007525 (25 bp)
TCCGCCTCCTGCTGAGCGGTATGTG
LOC_Os03g33310
OsAffx.13169.1.S1_at--153--7651Chr03:19007548..19007572 (25 bp)
GGGATGAGGAGCTCCACAACTACAT
LOC_Os03g33310
OsAffx.13169.1.S1_at--527--7051Chr03:19007759..19007783 (25 bp)
GTAAGGGCGCTTGGCCAATTTCAAG
LOC_Os03g33310
OsAffx.13169.1.S1_at--867--3611Chr03:19007809..19007833 (25 bp)
CTCGGTCCATAAGCTAGCGGCACAA
LOC_Os03g33310
Target Sequence 
CTTGAAGGAGAAACACCGGCGAATCAAGTCATCCCAGTGGAAAACTACACAATGGAAGGGGGCATTCACCCCTTGCTACG
GTGCCCAGCTCCCCAGCAAATATGGAGCCGGCCGGCAAACTCACTGCCTATTAAAGCGAGACGTCTTTTCCAAGACGATG
ACAAGGCCACTCCGCCTCCTGCTGAGCGGTATGTGGGCACCCTCTACACCAAGGCAGGGGATGAGGAGCTCCACAACTAC
ATCACACCCACCGCCACTCCATCCACCCCCAAGGAGGATTGGTTTTGCATTCGGAGAGTGCGAACTCCCGGCGGAGGGGC
AGCGGAATCCCGTTGCCCTCCACCTATGACGGTGAAGCGTCATTTGACGCCCCCTCCAATTGTAAGGGCGCTTGGCCAAT
TTCAAGAGGAAGAAGTGAAGTCGCCGGAACCCTCGGTCCATAAGCTAGCGGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis