Browse Element(s) Details


Os.51990.1.S1_at

Description gb:AK064486.1
DB_XREF= gi:32974504
TID=Os.51990.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B08, full insert sequence.
FL= gb:AK064486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g333001/11retrotransposon protein, putative, unclassified
LOC_Os06g350001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g250601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33240OsAffx.8864.1.S1_at5/113+18972256..18975023retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33250OsAffx.22699.1.S1_x_at3/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33250Os.56292.1.S1_x_at1/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33250OsAffx.30013.5.S1_x_at1/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33250Os.56292.1.S1_at1/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33250Os.39431.1.S1_x_at1/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33250Os.39431.1.S1_at1/113+18975874..18978972retrotransposon protein, putative, unclassified
LOC_Os03g33260NANA3+18982365..18984612retrotransposon protein, putative, unclassified
LOC_Os03g33270NANA3+18987852..18988088retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33280NANA3+18989291..18993294retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33290NANA3+18994484..18997731retrotransposon protein, putative, unclassified
LOC_Os03g33300OsAffx.5954.5.S1_x_at4/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33300Os.51990.1.S1_at1/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33300OsAffx.576.1.A1_at1/113+18998369..19006086retrotransposon protein, putative, unclassified
LOC_Os03g33310OsAffx.13169.1.S1_at11/113+19007126..19007968hypothetical protein
LOC_Os03g33319NANA3+19011272..19013696retrotransposon protein, putative, unclassified
LOC_Os03g33328NANA3+19014601..19020342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33340NANA3+19023119..19027234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33360Os.53142.1.S1_at3/113+19029527..19032039retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51990.1.S1_at--403--92Chr04:6600504..6600528 (25 bp)
ATTCCGTAGCGGATCATTTGTCTAG
NONE
Os.51990.1.S1_at--219--9553Chr10:12231421..12231441 (21 bp)
TCTAGGCTGCAAATCACTGACACGC
NONE
Os.51990.1.S1_at--559--731Chr02:11441213..11441237 (25 bp)
ATGTTGATGACGATTTGCGACTCTA
NONE
Os.51990.1.S1_at--243--211Chr02:11441201..11441225 (25 bp)
ATTTGCGACTCTAACCCGTGGTATG
NONE
Os.51990.1.S1_at--1052--8892Chr10:12231257..12231279 (23 bp)
TGAGAGCCGCTGTCATATATGGGAT
NONE
Os.51990.1.S1_at--1049--9972Chr03:19005586..19005685 (25 bp)
TACCTATATAGGGTCTGCTCTGGTG
LOC_Os03g33300
Os.51990.1.S1_at--153--3831Chr02:11441064..11441088 (25 bp)
CTGCTCTGGTGGCTTACTAAGAAGA
NONE
Os.51990.1.S1_at--183--591Chr02:11441040..11441064 (25 bp)
ATGCGTGCCGACTGAAGAGGGACTT
NONE
Os.51990.1.S1_at--1088--4111Chr02:11440961..11440985 (25 bp)
CGCACCCATGCCAAGATTTGACAAT
NONE
Os.51990.1.S1_at--309--7515Chr12:11621136..11621160 (25 bp)
GTGGTTTCTTCTAGCCAACAATGTA
NONE
Os.51990.1.S1_at--1129--9771Chr02:11440767..11440791 (25 bp)
TAAGTCCCGTGTCACGCCCTGATAA
NONE
Target Sequence 
ATTCCGTAGCGGATCATTTGTCTAGGCTGCAAATCACTGACACGCAGGAACAACTGATAAATGATTTCTTGAGAAATGAT
ATGTTGATGACGATTTGCGACTCTAACCCGTGGTATGCCAACTTAGTGAACTACATGGTATCCAAATACATACCACCGGG
AGAAAATTAATGGAAGCTGAAATATGAGAGCCGCTGTCATATATGGGATGAGCCATACCTATATAGGGTCTGCTCTGGTG
GCTTACTAAGAAGATGCGTGCCGACTGAAGAGGGACTTAAGATTATAGAACGATGCCATGCCTCACCTTATGGTGGCCAT
TATGGTGCATTCCGCACCCATGCCAAGATTTGACAATGTGGTTTCTTCTAGCCAACAATGTACGAAGATTCAAAAGAATT
TGTCAGAAGATGCCCAAACTGCTAGAGGCAAGGAGGAATCACTGCTTGCGATGCAATGCCCCTCACATACAACCTGCAAG
TTGAGATATTCGATGTTTGGGGTATTGACTTCATGGGACCTTTCCCTAAGTCCCGTGTCACGCCCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis