Browse Element(s) Details


OsAffx.1319.1.S1_at

Description gb:NM_188082.1
DB_XREF= gi:34903247
TID=OsAffx.1319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1683011/11transposon protein, putative, Mariner sub-class
LOC_Os05g086709/11transposon protein, putative, Mariner sub-class
LOC_Os01g469004/11transposon protein, putative, Mariner sub-class
LOC_Os04g321302/11transposon protein, putative, Mariner sub-class
LOC_Os11g309201/11transposon protein, putative, Mariner sub-class
LOC_Os12g399001/11transposon protein, putative, Mariner sub-class
LOC_Os05g487201/11transposon protein, putative, Mariner sub-class
LOC_Os03g493401/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16820OsAffx.19542.3.S1_x_at5/111+9571752..9575692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16830OsAffx.1319.1.S1_at11/111+9595829..9599229transposon protein, putative, Mariner sub-class
LOC_Os01g16840OsAffx.26789.1.S1_at11/111+9599925..9600965microneme protein Sm70, putative
LOC_Os01g16850NANA1+9610432..9622035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16860OsAffx.2022.1.S1_at11/111+9623957..9624974Argonaute AGO1 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1319.1.S1_at--917--4752Chr01:9598270..9598294 (25 bp)
GCTGCAGTGGTGTGTTTCTATGTTG
LOC_Os01g16830
OsAffx.1319.1.S1_at--1144--7732Chr05:4730019..4730043 (25 bp)
GGTGTGTTTCTATGTTGGATCCGCA
LOC_Os05g08670
OsAffx.1319.1.S1_at--92--6632Chr05:4730032..4730056 (25 bp)
GTTGGATCCGCATACATTGCCAAAC
LOC_Os05g08670
OsAffx.1319.1.S1_at--384--9692Chr05:4730044..4730068 (25 bp)
TACATTGCCAAACAACCCAAAGTTT
LOC_Os05g08670
OsAffx.1319.1.S1_at--653--5015Chr09:3893765..3893788 (24 bp)
GCAGGATAATGCTAGAACTCATCTC
NONE
OsAffx.1319.1.S1_at--130--9091Chr01:9598818..9598842 (25 bp)
TGCTAGAACTCATCTCACTATCGAT
LOC_Os01g16830
OsAffx.1319.1.S1_at--357--10832Chr05:4730594..4730618 (25 bp)
TTGGTGTGGCAGTAGCCCAAACCGG
LOC_Os05g08670
OsAffx.1319.1.S1_at--493--8252Chr05:4730601..4730625 (25 bp)
GGCAGTAGCCCAAACCGGACTTGAT
LOC_Os05g08670
OsAffx.1319.1.S1_at--166--2373Chr05:4730612..4730636 (25 bp)
AAACCGGACTTGATATTCGCCTCGT
LOC_Os05g08670
OsAffx.1319.1.S1_at--819--6517Chr11:17490779..17490803 (25 bp)
GATATTCGCCTCGTGAATCAACCTC
LOC_Os11g30920
OsAffx.1319.1.S1_at--130--3253Chr05:4730641..4730665 (25 bp)
CAACCTCCAAATTCCCCGGATATGA
LOC_Os05g08670
Target Sequence 
GCTGCAGTGGTGTGTTTCTATGTTGGATCCGCATACATTGCCAAACAACCCAAAGTTTATTGAAATGGAAAATATTATCC
ACATAGATGAGAAATGGTTCAATGCATCAAAGAAGGAGAAGACTTTCTACCTGTATCCGGGTGAAAAGGAGCCATATTTC
ACAGTGCACAACAAGAACGCCATTGATAAAGTAATGTTCTTATCAGCAGTTGCGAAACCAAGGTATGGTGATGAGGGTAA
TTGCACTTTTGATGGAAAGATAGGCATTTGGCCTTTTACTAGGAAGGAACCAGCCCAAAGGAGAAGTCGTAATAGAGAAA
GGGGAACACTAGTAACCAAGCTAATAAAGGTTGATAGAGACACCATAAGATCATTCATGATCTCTAAAGTGCTACCAGCT
ATTAGAGCATGTTGGCCTCGAGAAGATGCAAGAAAAACCATATGGATTCAGCAGGATAATGCTAGAACTCATCTCACTAT
CGATGATGCACAGTTTGGTGTGGCAGTAGCCCAAACCGGACTTGATATTCGCCTCGTGAATCAACCTCCAAATTCCCCGG
ATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis