Browse Element(s) Details


OsAffx.13427.1.S1_at

Description tigr:9631.m04864
TID=OsAffx.13427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4985011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49830OsAffx.25650.1.S1_at11/113+28339651..28340925expressed protein
LOC_Os03g49830OsAffx.25650.1.S1_x_at11/113+28339651..28340925expressed protein
LOC_Os03g49840OsAffx.25651.1.S1_at11/113+28348659..28349401hypothetical protein
LOC_Os03g49850OsAffx.13427.1.S1_at11/113+28356958..28357317hypothetical protein
LOC_Os03g49860OsAffx.25652.1.S1_at11/113+28358944..28361845hypothetical protein
LOC_Os03g49870NANA3+28363720..28366967transposon protein, putative, Mariner sub-class
LOC_Os03g49880Os.13012.1.S1_at11/113+28377677..28379633TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13427.1.S1_at--400--10031Chr03:28356995..28357019 (25 bp)
TAGACTCGGGAGCAGCGGATTCACC
LOC_Os03g49850
OsAffx.13427.1.S1_at--945--6551Chr03:28357012..28357036 (25 bp)
GATTCACCTCTGCTAACCTCGGTGA
LOC_Os03g49850
OsAffx.13427.1.S1_at--550--5271Chr03:28357049..28357073 (25 bp)
GAATGACGGTAGTAGCTAGGGCAAC
LOC_Os03g49850
OsAffx.13427.1.S1_at--1068--10031Chr03:28357065..28357089 (25 bp)
TAGGGCAACGGCGACAATAGCAACA
LOC_Os03g49850
OsAffx.13427.1.S1_at--585--291Chr03:28357081..28357105 (25 bp)
ATAGCAACAAGCCACGCGAGGGTAG
LOC_Os03g49850
OsAffx.13427.1.S1_at--817--6311Chr03:28357164..28357188 (25 bp)
GATGACAATAATGACGACCAGGGCT
LOC_Os03g49850
OsAffx.13427.1.S1_at--1122--1851Chr03:28357177..28357201 (25 bp)
ACGACCAGGGCTAGGATGACGACGA
LOC_Os03g49850
OsAffx.13427.1.S1_at--246--5171Chr03:28357210..28357234 (25 bp)
GCAAGCCGCGCGAGGGCAGATCCTA
LOC_Os03g49850
OsAffx.13427.1.S1_at--846--5011Chr03:28357225..28357249 (25 bp)
GCAGATCCTAGTGGCGCCGAACTCG
LOC_Os03g49850
OsAffx.13427.1.S1_at--531--5471Chr03:28357243..28357267 (25 bp)
GAACTCGGGAGAGGCAGATTCGCCA
LOC_Os03g49850
OsAffx.13427.1.S1_at--255--1251Chr03:28357258..28357282 (25 bp)
AGATTCGCCAATGTCGGCCTTAGGA
LOC_Os03g49850
Target Sequence 
TAGACTCGGGAGCAGCGGATTCACCTCTGCTAACCTCGGTGACGTCGACGATGAGAATGACGGTAGTAGCTAGGGCAACG
GCGACAATAGCAACAAGCCACGCGAGGGTAGACTTGGCGGCGCCGGACTCGGGAGCGGCGGATCCGCCTCCGCCGTCCTC
GGCGATGATGATGACAATAATGACGACCAGGGCTAGGATGACGACGATGACGATGGCAAGCCGCGCGAGGGCAGATCCTA
GTGGCGCCGAACTCGGGAGAGGCAGATTCGCCAATGTCGGCCTTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis