Browse Element(s) Details


OsAffx.13444.1.S1_at

Description tigr:9631.m04940
TID=OsAffx.13444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5057010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein
LOC_Os03g50580NANA3+28831688..28832032expressed protein
LOC_Os03g50590OsAffx.25660.1.S1_at11/113+28839634..28840107expressed protein
LOC_Os03g50600NANA3+28845225..28845605hypothetical protein
LOC_Os03g50610NANA3+28849197..28849529hypothetical protein
LOC_Os03g50620Os.11878.1.S1_at6/113+28850247..28856094expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13444.1.S1_at--896--1631Chr03:28824986..28825010 (25 bp)
AGCGGGAGAAGCTCTCGGCCATTTC
LOC_Os03g50570
OsAffx.13444.1.S1_at--950--10771Chr03:28825472..28825496 (25 bp)
TTGTCTCAGTCAGAGGAACCGTTGA
LOC_Os03g50570
OsAffx.13444.1.S1_at--72--5611Chr03:28825495..28825519 (25 bp)
GACAATTGTATCACCAGCGCAGCAT
LOC_Os03g50570
OsAffx.13444.1.S1_at--591--1651Chr03:28825510..28825534 (25 bp)
AGCGCAGCATCCTTCAAGTTGTACA
LOC_Os03g50570
OsAffx.13444.1.S1_at--26--2651Chr03:28825535..28825559 (25 bp)
AACCAAGAGGACTTCAGACCGCTGT
LOC_Os03g50570
OsAffx.13444.1.S1_at--180--10531Chr03:28825547..28825571 (25 bp)
TTCAGACCGCTGTTTCATGACAAAT
LOC_Os03g50570
OsAffx.13444.1.S1_at--592--7731Chr03:28825586..28825610 (25 bp)
GGTGGACCGTCCATAGCAACTATTT
LOC_Os03g50570
OsAffx.13444.1.S1_at--641--2931Chr03:28825727..28825751 (25 bp)
AAGGCACACTTGAACTCTTTCAGTT
LOC_Os03g50570
OsAffx.13444.1.S1_at--981--1411Chr03:28825763..28825787 (25 bp)
AGAACTGTGACTATACTCCAAAAGA
LOC_Os03g50570
OsAffx.13444.1.S1_at--567--6451NONE
GATAAATCCAACTTTCCAACTCCGC
NONE
OsAffx.13444.1.S1_at--342--371Chr03:28829973..28829997 (25 bp)
ATCAAGTTGGAGTCCAGCACACTCA
LOC_Os03g50570
Target Sequence 
AGCGGGAGAAGCTCTCGGCCATTTCCCGGCGGATCAGCGCTGCAAAAGCTAAGATAAAAACATTGTCTCAGTCAGAGGAA
CCGTTGACAATTGTATCACCAGCGCAGCATCCTTCAAGTTGTACAAACCAAGAGGACTTCAGACCGCTGTTTCATGACAA
ATATGATGACAATAGTGGTGGACCGTCCATAGCAACTATTTCAGTAAATGGAGGGTTCAACAGAGAATATGGACTAGAAG
GCACACTTGAACTCTTTCAGTTTTTCTCTGAGGAGAACTGTGACTATACTCCAAAAGAAGGCCGTTTAAAGGTTAAAAAT
AAACCTGCTGAAGCTAAAGATGACACATATTTAGGGAGTCTTATGGATAAATCCAACTTTCCAACTCCGCAAAACATTTC
AATGTCTGGCAAGGACATGAAGATTGAAGAACTTCCACCTCCACCACCAAGTCTAATATCAAAACACCTGGCTAAAAACC
AGAGATCTGATGATGTTAGATTCGAATCAAGTTGGAGTCCAGCACACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis