Browse Element(s) Details


Os.38545.1.S1_s_at

Description gb:BE040116
DB_XREF= gi:8335132
DB_XREF=OD104H03
TID=Os.38545.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38545 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172936.1 (A.thaliana) dynamin, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5052011/11Dynamin-related protein 1C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38545.1.S1_s_at--466--5051Chr03:28799667..28799691 (25 bp)
GCAGCACTGAAAAAGCTTCCATTTG
LOC_Os03g50520
Os.38545.1.S1_s_at--1046--4911Chr03:28799681..28799705 (25 bp)
GCTTCCATTTGATAAGCATCTTTCA
LOC_Os03g50520
Os.38545.1.S1_s_at--344--6471Chr03:28799691..28799715 (25 bp)
GATAAGCATCTTTCATTGCAAAATG
LOC_Os03g50520
Os.38545.1.S1_s_at--1103--3571Chr03:28799704..28799728 (25 bp)
CATTGCAAAATGTTCGGAAAGTCAT
LOC_Os03g50520
Os.38545.1.S1_s_at--242--9431Chr03:28799717..28799741 (25 bp)
TCGGAAAGTCATTTCAGAGGCTGAT
LOC_Os03g50520
Os.38545.1.S1_s_at--1151--9591Chr03:28799725..28799749 (25 bp)
TCATTTCAGAGGCTGATGGTTATCA
LOC_Os03g50520
Os.38545.1.S1_s_at--177--6251Chr03:28799739..28799763 (25 bp)
GATGGTTATCAACCCCACTTGATTG
LOC_Os03g50520
Os.38545.1.S1_s_at--334--2071Chr03:28799755..28799779 (25 bp)
ACTTGATTGCCCCTGAGCAAGGGTA
LOC_Os03g50520
Os.38545.1.S1_s_at--1050--3851Chr03:28799767..28799791 (25 bp)
CTGAGCAAGGGTACAGAAGGCTTAT
LOC_Os03g50520
Os.38545.1.S1_s_at--1141--2911Chr03:28799783..28799807 (25 bp)
AAGGCTTATAGATAGTTCGCTCCAC
LOC_Os03g50520
Os.38545.1.S1_s_at--837--6491Chr03:28799793..28799817 (25 bp)
GATAGTTCGCTCCACTACTTCAGGG
LOC_Os03g50520
Target Sequence 
GCAGCACTGAAAAAGCTTCCATTTGATAAGCATCTTTCATTGCAAAATGTTCGGAAAGTCATTTCAGAGGCTGATGGTTA
TCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAAGGCTTATAGATAGTTCGCTCCACTACTTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38545.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis