Browse Element(s) Details


OsAffx.3564.1.S1_s_at

Description tigr:9631.m04932
TID=OsAffx.3564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3564.1.S1_s_at--406--6611Chr03:28783713..28783737 (25 bp)
GATTGTGGAGCTAATTGATGATTGT
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--578--2431Chr03:28783758..28783782 (25 bp)
AAAAGCTGTCAAATGGCCACTGAAA
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--865--871Chr03:28783770..28783794 (25 bp)
ATGGCCACTGAAACAAGAAGAGCAA
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--80--5371Chr03:28783786..28783810 (25 bp)
GAAGAGCAAACCAGACCATGGGCAT
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--1074--2351Chr03:28783793..28783817 (25 bp)
AAACCAGACCATGGGCATTGTTGAT
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--359--5851Chr03:28783799..28783823 (25 bp)
GACCATGGGCATTGTTGATGTTAAA
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--296--5151Chr03:28783824..28783848 (25 bp)
GCAACAACAATTATATTGGCACAAT
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--383--10771Chr03:28783839..28783863 (25 bp)
TTGGCACAATTACACAGCCCACATC
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--497--3311Chr03:28783858..28783882 (25 bp)
CACATCAGCGACCTCATGCTAGAAG
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--67--4611Chr03:28783865..28783889 (25 bp)
GCGACCTCATGCTAGAAGATATTGG
LOC_Os03g50500
OsAffx.3564.1.S1_s_at--232--7451Chr03:28783902..28783926 (25 bp)
GTGTGACTAACATAACCTTCAAGGC
LOC_Os03g50500
Target Sequence 
GATTGTGGAGCTAATTGATGATTGTATTGAAAAATTAGGTGAGAAAAAAGCTGTCAAATGGCCACTGAAACAAGAAGAGC
AAACCAGACCATGGGCATTGTTGATGTTAAAGCAACAACAATTATATTGGCACAATTACACAGCCCACATCAGCGACCTC
ATGCTAGAAGATATTGGGCTACACCTAAAGTGTGACTAACATAACCTTCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3564.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis