Browse Element(s) Details


OsAffx.13440.1.S1_at

Description tigr:9631.m04933
TID=OsAffx.13440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative threonine dehydratasedeaminase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5051010/11Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006566biological_processthreonine metabolism
GO:0009069biological_processserine family amino acid metabolism
GO:0004794molecular_functionthreonine ammonia-lyase activity
GO:0030378molecular_functionserine racemase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13440.1.S1_at--638--1971Chr03:28792140..28792164 (25 bp)
ACTGAGCTGGCTGATGTTGGTCGAA
LOC_Os03g50510
OsAffx.13440.1.S1_at--236--2591Chr03:28792165..28792189 (25 bp)
AACGAGAAGCAGTTCTTGCCACATT
LOC_Os03g50510
OsAffx.13440.1.S1_at--546--2431Chr03:28792362..28792385 (24 bp)
AAAAGATGCCCTTGTCCTTTACAGT
LOC_Os03g50510
OsAffx.13440.1.S1_at--433--7411Chr03:28792576..28792600 (25 bp)
GTGTTGGCATCTACACTGACGATGA
LOC_Os03g50510
OsAffx.13440.1.S1_at--859--6471NONE
GATACTTTATTGGTGGCAGGTCAGA
NONE
OsAffx.13440.1.S1_at--563--5571Chr03:28793254..28793278 (25 bp)
GAAAGGCCTGGTGCACTTATGAAAT
LOC_Os03g50510
OsAffx.13440.1.S1_at--939--5211Chr03:28793304..28793328 (25 bp)
GAATATCAGCCTTTTCCATTACCGT
LOC_Os03g50510
OsAffx.13440.1.S1_at--609--10271Chr03:28793316..28793340 (25 bp)
TTTCCATTACCGTGCACAGGTGTGT
LOC_Os03g50510
OsAffx.13440.1.S1_at--183--6851Chr03:28793361..28793385 (25 bp)
GTTTCCCTGCTGTAAAGTAGTCTTG
LOC_Os03g50510
OsAffx.13440.1.S1_at--555--5591Chr03:28793412..28793436 (25 bp)
GAAATCGTCATTTTATTGCCATCTA
LOC_Os03g50510
OsAffx.13440.1.S1_at--300--9551Chr03:28793433..28793457 (25 bp)
TCTATCCTGTACAATATTCCCTTTC
LOC_Os03g50510
Target Sequence 
ACTGAGCTGGCTGATGTTGGTCGAAAACGAGAAGCAGTTCTTGCCACATTTTTGCCAGAGGAGCAGGGAAGCTTCAAAAA
GTTTGCAGAGCTGGTTGGCCGGATGAATATTACTGAATTCAAATACAGATACGATTGCAATGCAAAAGATGCCCTTGTCC
TTTACAGTGTTGGCATCTACACTGACGATGAACTTAAAGCAATGGTGGAACGTATGGAATCTTCAAAATTGAGAACTGTT
GATCTTACTGACAATGATTTGGCAAAGGATCATCTAAGATACTTTATTGGTGGCAGGTCAGAAGTAACAGATGAACTTGT
TTACCGGTTCATTTTCCCAGAAAGGCCTGGTGCACTTATGAAATTTTTGGATGCATTCAGCCCCCGCTGGAATATCAGCC
TTTTCCATTACCGTGCACAGGTGTGTGACAGATTTATTATTCATCAGTTTCCCTGCTGTAAAGTAGTCTTGTATGAAAAT
TGCAATCTCATGCATCTGAAATCGTCATTTTATTGCCATCTATCCTGTACAATATTCCCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis