Browse Element(s) Details


Os.3075.1.S1_s_at

Description gb:AK103803.1
DB_XREF= gi:32989012
TID=Os.3075.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146J16, full insert sequence.
FL= gb:AK103803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3075.1.S1_s_at--73--10451Chr03:28783542..28783566 (25 bp)
TTAGGTTTCACAGTCTGCTGGAACC
LOC_Os03g50500
Os.3075.1.S1_s_at--757--7171Chr03:28783554..28783578 (25 bp)
GTCTGCTGGAACCAATTGGTGGCCA
LOC_Os03g50500
Os.3075.1.S1_s_at--25--4391Chr03:28783565..28783589 (25 bp)
CCAATTGGTGGCCATGGTTGAAATT
LOC_Os03g50500
Os.3075.1.S1_s_at--419--1011Chr03:28783593..28783617 (25 bp)
AGGTTCTGATTTTCTATGAGCTTTT
LOC_Os03g50500
Os.3075.1.S1_s_at--399--5911Chr03:28783610..28783634 (25 bp)
GAGCTTTTTGACAGGCTATGGGCAT
LOC_Os03g50500
Os.3075.1.S1_s_at--329--4871Chr03:28783624..28783648 (25 bp)
GCTATGGGCATGGTTGGCCACTTCT
LOC_Os03g50500
Os.3075.1.S1_s_at--897--2351Chr03:28783759..28783783 (25 bp)
AAAGCTGTCAAATGGCCACTGAAAC
LOC_Os03g50500
Os.3075.1.S1_s_at--503--5951Chr03:28783789..28783813 (25 bp)
GAGCAAACCAGACCATGGGCATTGT
LOC_Os03g50500
Os.3075.1.S1_s_at--1037--10191Chr03:28783835..28783859 (25 bp)
TATATTGGCACAATTACACAGCCCA
LOC_Os03g50500
Os.3075.1.S1_s_at--498--3311Chr03:28783858..28783882 (25 bp)
CACATCAGCGACCTCATGCTAGAAG
LOC_Os03g50500
Os.3075.1.S1_s_at--231--7451Chr03:28783902..28783926 (25 bp)
GTGTGACTAACATAACCTTCAAGGC
LOC_Os03g50500
Target Sequence 
TTAGGTTTCACAGTCTGCTGGAACCAATTGGTGGCCATGGTTGAAATTTAAAGGTTCTGATTTTCTATGAGCTTTTTGAC
AGGCTATGGGCATGGTTGGCCACTTCTGAGGTGAGAAAAAAGCTGTCAAATGGCCACTGAAACAAGAAGAGCAAACCAGA
CCATGGGCATTGTTGATGTTAAAGCAACAACAATTATATTGGCACAATTACACAGCCCACATCAGCGACCTCATGCTAGA
AGATATTGGGCTACACCTAAAGTGTGACTAACATAACCTTCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3075.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis